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IMGVR_UViG_3300035050_000175-3300035050-Ga0376522_002199_2_109
Arc-VirIMGVR_UViG_3300035050_000175-3300035050-Ga0376522_002199_2_109
Identity
- Kingdom:
- archaea
Quality
78.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-31
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.80 | 64.0 | 5.44e-01 | 100.0% | 98.2% |
| 4navA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.75 | 61.0 | 3.74e-01 | 93.3% | 81.8% |
| 2vx3C02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.74 | 54.0 | 3.19e-01 | 80.0% | 44.8% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.73 | 54.0 | 4.10e-01 | 80.0% | 33.8% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.72 | 57.0 | 3.66e-01 | 93.3% | 19.8% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.71 | 56.0 | 3.40e-01 | 100.0% | 26.6% |
| 8es5A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.71 | 57.0 | 3.73e-01 | 93.3% | 86.2% |
| 2qr4A02 | 1.10.287.830 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like | 0.71 | 51.0 | 4.47e-01 | 80.0% | 57.4% |
| 6zhhA01 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.69 | 48.0 | 2.96e-01 | 70.0% | 11.7% |
| 1yx1A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.68 | 52.0 | 3.03e-01 | 83.3% | 22.4% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.68 | 52.0 | 4.12e-01 | 90.0% | 92.4% |
| 3m0fA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.67 | 51.0 | 3.85e-01 | 96.7% | 32.9% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.67 | 52.0 | 3.33e-01 | 90.0% | 40.5% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.65 | 47.0 | 3.97e-01 | 86.7% | 41.9% |
| 2yfvC00 | 6.10.250.2010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 49.0 | 3.97e-01 | 96.7% | 43.3% |
| 3chxA02 | 1.10.287.710 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 47.0 | 3.41e-01 | 83.3% | 48.5% |
| 3gwmA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.63 | 46.0 | 3.13e-01 | 83.3% | 39.5% |
| 5suvC00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.63 | 50.0 | 3.38e-01 | 93.3% | 24.0% |
| 1pmtA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 47.0 | 3.48e-01 | 96.7% | 27.7% |
| 2mkyA00 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.61 | 43.0 | 3.91e-01 | 100.0% | 100.0% |
| 3m4aA03 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.60 | 44.0 | 3.06e-01 | 80.0% | 36.4% |
| 4ifdK02 | 6.10.250.2660 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 49.0 | 4.77e-01 | 100.0% | 85.3% |
| 5xuhA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.59 | 46.0 | 3.15e-01 | 93.3% | 24.0% |
| 3ewiB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.59 | 48.0 | 3.11e-01 | 100.0% | 51.3% |
| 4yy8B01 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.58 | 49.0 | 3.74e-01 | 100.0% | 75.6% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 44.0 | 3.70e-01 | 90.0% | 49.1% |
| 1oe8A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 43.0 | 3.33e-01 | 93.3% | 36.3% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 44.0 | 3.57e-01 | 100.0% | 83.6% |
| 3anwA02 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.54 | 45.0 | 3.81e-01 | 90.0% | 75.9% |
| 1bq5A02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 37.0 | 2.47e-01 | 90.0% | 17.4% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3508428 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 59.0 | 3.61e-01 | 80.0% | 13.9% |
| 3470968 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.77 | 58.0 | 3.46e-01 | 83.3% | 15.6% |
| 56911 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.73 | 57.0 | 3.68e-01 | 93.3% | 19.8% |
| 145432 | 170.2.1.2 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Gag_p30 | 0.71 | 53.0 | 3.46e-01 | 76.7% | 22.7% |
| 4947615 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.71 | 53.0 | 4.24e-01 | 86.7% | 89.2% |
| 3265510 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.70 | 51.0 | 3.14e-01 | 80.0% | 20.0% |
| 3567761 | 377.9.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS | 0.69 | 50.0 | 4.77e-01 | 86.7% | 65.0% |
| 3735923 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.68 | 58.0 | 3.13e-01 | 100.0% | 47.0% |
| 4999722 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.68 | 52.0 | 3.84e-01 | 96.7% | 46.3% |
| 5029842 | 101.1.2.645 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_40 | 0.68 | 52.0 | 3.61e-01 | 90.0% | 40.0% |
| 3514894 | 386.1.1.337 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CCDC174_GRSR | 0.67 | 53.0 | 5.33e-01 | 100.0% | 100.0% |
| 3652359 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.64 | 49.0 | 3.22e-01 | 100.0% | 17.6% |
| 4985007 | 7581.1.1.6 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C | 0.64 | 53.0 | 3.45e-01 | 100.0% | 33.6% |
| 3862747 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 53.0 | 3.77e-01 | 93.3% | 45.9% |
| 3544534 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.63 | 53.0 | 3.82e-01 | 93.3% | 48.8% |
| 3966575 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 49.0 | 2.94e-01 | 96.7% | 20.4% |
| 4568416 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 45.0 | 3.31e-01 | 83.3% | 75.6% |
| 3811532 | 304.9.1.7 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS | 0.58 | 42.0 | 3.07e-01 | 93.3% | 26.7% |
| 5025086 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.57 | 47.0 | 3.99e-01 | 100.0% | 54.5% |
| 3628468 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.57 | 43.0 | 3.41e-01 | 90.0% | 36.0% |
| 4877360 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.51 | 36.0 | 2.79e-01 | 73.3% | 43.7% |