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IMGVR_UViG_3300035053_000235-3300035053-Ga0376525_005193_420_701
Arc-VirIMGVR_UViG_3300035053_000235-3300035053-Ga0376525_005193_420_701
Identity
- Kingdom:
- archaea
Quality
80.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-81
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.73 | 46.0 | 4.40e-01 | 96.1% | 56.3% |
| 7y8sB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 46.0 | 4.46e-01 | 96.1% | 59.5% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 42.0 | 4.18e-01 | 97.4% | 57.0% |
| 1o5uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.71 | 35.0 | 3.39e-01 | 83.1% | 40.9% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 44.0 | 4.05e-01 | 90.9% | 54.1% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 38.0 | 3.75e-01 | 89.6% | 55.0% |
| 6m3aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 41.0 | 4.40e-01 | 97.4% | 75.8% |
| 3dlqR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 38.0 | 3.50e-01 | 97.4% | 45.0% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 33.0 | 2.97e-01 | 83.1% | 34.6% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 34.0 | 2.89e-01 | 89.6% | 32.8% |
| 2dlgA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 37.0 | 3.67e-01 | 97.4% | 57.5% |
| 1yhpA02 | 2.60.40.1720 | Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 | 0.61 | 39.0 | 3.42e-01 | 96.1% | 42.5% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 36.0 | 3.93e-01 | 81.8% | 71.2% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.60 | 41.0 | 3.55e-01 | 89.6% | 46.2% |
| 3szpB02 | 3.40.190.290 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.60 | 36.0 | 2.75e-01 | 90.9% | 23.1% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 47.0 | 4.03e-01 | 85.7% | 53.8% |
| 2jdjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 48.0 | 4.38e-01 | 88.3% | 97.1% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 45.0 | 4.01e-01 | 89.6% | 56.9% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 35.0 | 3.78e-01 | 97.4% | 71.2% |
| 2m6pA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.57 | 31.0 | 3.71e-01 | 79.2% | 84.8% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.57 | 42.0 | 3.97e-01 | 90.9% | 63.5% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 38.0 | 4.34e-01 | 96.1% | 96.4% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 35.0 | 3.12e-01 | 80.5% | 43.6% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.56 | 40.0 | 3.78e-01 | 84.4% | 61.2% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 39.0 | 4.31e-01 | 97.4% | 96.6% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.55 | 35.0 | 3.53e-01 | 83.1% | 64.5% |
| 4yn3A02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.55 | 43.0 | 3.59e-01 | 85.7% | 97.0% |
| 1tq5A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 42.0 | 3.52e-01 | 87.0% | 50.4% |
| 1ycoA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.52 | 45.0 | 3.14e-01 | 100.0% | 63.0% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.52 | 39.0 | 2.98e-01 | 83.1% | 83.6% |
| 3i6sA03 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.52 | 40.0 | 3.46e-01 | 87.0% | 99.2% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 45.0 | 3.95e-01 | 100.0% | 97.4% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.51 | 36.0 | 3.77e-01 | 100.0% | 80.6% |
| 2vecA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 40.0 | 3.41e-01 | 88.3% | 52.4% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.50 | 45.0 | 3.90e-01 | 100.0% | 75.8% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.50 | 35.0 | 3.85e-01 | 80.5% | 100.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3800901 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.76 | 48.0 | 4.26e-01 | 96.1% | 46.7% |
| 4018366 | 72.1.1.0 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like | 0.74 | 43.0 | 4.17e-01 | 85.7% | 51.8% |
| 3200355 | 72.1.1.0 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like | 0.70 | 41.0 | 3.88e-01 | 87.0% | 50.0% |
| 5054262 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 37.0 | 3.57e-01 | 96.1% | 46.7% |
| 5007278 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.65 | 42.0 | 3.46e-01 | 85.7% | 39.2% |
| 3970207 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 34.0 | 3.10e-01 | 83.1% | 38.1% |
| 4241460 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.63 | 42.0 | 3.46e-01 | 98.7% | 39.3% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.62 | 47.0 | 3.96e-01 | 89.6% | 49.6% |
| 3958896 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.60 | 36.0 | 3.96e-01 | 79.2% | 75.0% |
| 4123180 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.60 | 37.0 | 3.75e-01 | 81.8% | 62.7% |
| 4658938 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.59 | 37.0 | 3.51e-01 | 83.1% | 53.3% |
| 3603549 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 42.0 | 4.27e-01 | 84.4% | 75.6% |
| 3712219 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.58 | 39.0 | 4.21e-01 | 90.9% | 83.1% |
| 6198 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.57 | 37.0 | 3.28e-01 | 83.1% | 45.9% |
| 3933380 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.56 | 42.0 | 3.69e-01 | 84.4% | 53.0% |
| 5027750 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 37.0 | 4.27e-01 | 97.4% | 94.5% |
| 4883268 | 304.139.2.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 | 0.56 | 43.0 | 2.84e-01 | 84.4% | 18.5% |
| 3668540 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.56 | 45.0 | 3.51e-01 | 88.3% | 100.0% |
| 3673352 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.55 | 44.0 | 3.76e-01 | 88.3% | 98.5% |
| 5040885 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 3.63e-01 | 100.0% | 53.9% |
| 3661748 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.55 | 44.0 | 3.80e-01 | 87.0% | 99.2% |
| 4450183 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 40.0 | 3.55e-01 | 84.4% | 52.2% |
| 4930828 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 3.50e-01 | 100.0% | 49.6% |
| 3972951 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.55 | 34.0 | 3.50e-01 | 81.8% | 65.3% |
| 3421509 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.54 | 43.0 | 3.58e-01 | 88.3% | 99.3% |
| 4083103 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 40.0 | 3.48e-01 | 89.6% | 52.0% |
| 3441324 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.52 | 42.0 | 3.46e-01 | 88.3% | 100.0% |
| 3478944 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.52 | 45.0 | 4.11e-01 | 100.0% | 81.0% |
| 4332271 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.52 | 46.0 | 3.91e-01 | 97.4% | 74.0% |
| 4958791 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 38.0 | 4.29e-01 | 84.4% | 100.0% |
| 3473990 | 223.1.1.98 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 | 0.52 | 37.0 | 2.70e-01 | 75.3% | 40.9% |
| 5075196 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.49e-01 | 96.1% | 56.5% |
| 3426874 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.51 | 40.0 | 3.39e-01 | 87.0% | 100.0% |
| 4101701 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 28.0 | 3.38e-01 | 75.3% | 97.5% |
| 4956150 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 33.0 | 3.86e-01 | 97.4% | 94.5% |
| 3272450 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 35.0 | 3.14e-01 | 92.2% | 50.9% |
| 4452949 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 41.0 | 3.97e-01 | 90.9% | 86.7% |