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IMGVR_UViG_3300035099_000586-3300035099-Ga0373621_000967_31121_32620
Arc-VirIMGVR_UViG_3300035099_000586-3300035099-Ga0373621_000967_31121_32620
Identity
- Kingdom:
- archaea
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 268-314_350-493
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09369.16 best | MZB | 36.0 | 1.30e-08 | 44.0% | 100.0% |
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5t0oA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.68 | 32.0 | 4.26e-01 | 75.4% | 81.6% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 31.0 | 4.41e-01 | 74.9% | 92.0% |
| 1y0hB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 29.0 | 3.84e-01 | 92.1% | 79.6% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.63 | 34.0 | 4.50e-01 | 96.9% | 93.5% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.63 | 30.0 | 4.25e-01 | 74.3% | 96.6% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 29.0 | 3.70e-01 | 98.4% | 71.6% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 29.0 | 3.93e-01 | 75.4% | 83.7% |
| 6ruiK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.62 | 32.0 | 4.26e-01 | 70.2% | 91.3% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.62 | 34.0 | 4.24e-01 | 92.1% | 85.6% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 28.0 | 3.63e-01 | 79.1% | 73.1% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 23.0 | 3.54e-01 | 73.3% | 83.8% |
| 7qh2C03 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 27.0 | 4.04e-01 | 75.9% | 100.0% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.60 | 24.0 | 3.54e-01 | 91.1% | 81.2% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 31.0 | 3.87e-01 | 98.4% | 82.1% |
| 1j6wA00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.60 | 43.0 | 4.61e-01 | 96.9% | 86.3% |
| 4u9rA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 28.0 | 3.99e-01 | 75.4% | 100.0% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 33.0 | 3.80e-01 | 98.4% | 75.9% |
| 1ie0A00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.57 | 41.0 | 4.46e-01 | 97.4% | 89.1% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 26.0 | 3.52e-01 | 92.1% | 84.4% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 29.0 | 3.73e-01 | 93.2% | 86.1% |
| 3w3sA01 | 3.30.70.1920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 30.0 | 3.23e-01 | 92.1% | 55.4% |
| 4ofdB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 27.0 | 3.66e-01 | 80.6% | 87.4% |
| 6x4tA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 27.0 | 3.73e-01 | 78.5% | 94.1% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 26.0 | 3.61e-01 | 80.6% | 87.8% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 24.0 | 3.18e-01 | 70.7% | 69.2% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.55 | 32.0 | 3.63e-01 | 75.4% | 73.4% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 30.0 | 3.81e-01 | 82.7% | 89.9% |
| 4of8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 27.0 | 3.57e-01 | 81.2% | 86.4% |
| 1wjwA01 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.53 | 26.0 | 3.61e-01 | 74.9% | 100.0% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 28.0 | 3.63e-01 | 93.2% | 90.7% |
| 3o3uN03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 28.0 | 3.54e-01 | 81.2% | 86.5% |
| 4gf3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 33.0 | 3.93e-01 | 92.7% | 95.9% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 24.0 | 3.23e-01 | 91.6% | 84.3% |
| 2f7lA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 24.0 | 3.57e-01 | 74.3% | 98.8% |
| 8ediA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 26.0 | 3.45e-01 | 81.7% | 87.5% |
| 3cxjA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 37.0 | 4.20e-01 | 94.2% | 98.6% |
| 5a2fA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 27.0 | 3.47e-01 | 80.6% | 87.5% |
| 2v94B00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 25.0 | 3.45e-01 | 77.5% | 96.8% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940105 | 309.1.1.14 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › MZB | 0.84 | 65.0 | 7.17e-01 | 97.4% | 96.8% |
| 4992132 | 309.1.1.14 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › MZB | 0.83 | 66.0 | 7.18e-01 | 97.9% | 96.9% |
| 4966086 | 309.1.1.14 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › MZB | 0.83 | 71.0 | 7.45e-01 | 96.9% | 96.6% |
| 4958236 | 309.1.1.14 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › MZB | 0.82 | 69.0 | 7.34e-01 | 99.0% | 97.1% |
| 5049819 | 309.1.1.14 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › MZB | 0.82 | 70.0 | 7.29e-01 | 99.5% | 95.4% |
| 3207865 | 309.1.1.14 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › MZB | 0.82 | 67.0 | 6.50e-01 | 98.4% | 77.1% |
| 4966179 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.78 | 74.0 | 6.04e-01 | 99.0% | 83.9% |
| 3652459 | 309.1.1.14 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › MZB | 0.76 | 67.0 | 6.66e-01 | 99.5% | 89.2% |
| 5021824 | 309.1.1.14 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › MZB | 0.75 | 70.0 | 6.61e-01 | 98.4% | 99.1% |
| 5074728 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.65 | 27.0 | 4.09e-01 | 74.3% | 91.3% |
| 3902600 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.63 | 31.0 | 4.10e-01 | 72.3% | 86.0% |
| 3706456 | 304.55.2.8 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons | 0.63 | 32.0 | 4.34e-01 | 75.4% | 98.9% |
| 5043656 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.61 | 29.0 | 4.01e-01 | 90.6% | 90.5% |
| 3705403 | 304.47.1.2 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › FAZ1_cons | 0.61 | 31.0 | 4.17e-01 | 75.4% | 95.8% |
| 1565208 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.60 | 27.0 | 4.01e-01 | 74.3% | 100.0% |
| 5047147 | 304.19.1.0 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain | 0.60 | 29.0 | 3.82e-01 | 75.4% | 81.9% |
| 4679172 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.60 | 26.0 | 3.89e-01 | 74.9% | 95.0% |
| 3706819 | 304.49.1.6 ↗ | a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 › FAZ1_cons | 0.60 | 33.0 | 4.03e-01 | 71.2% | 83.3% |
| 3274324 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.60 | 30.0 | 3.88e-01 | 99.5% | 82.7% |
| 3700806 | 304.31.1.3 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › FAZ1_cons | 0.60 | 30.0 | 4.07e-01 | 75.4% | 94.7% |
| 4322056 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.60 | 28.0 | 3.97e-01 | 75.4% | 96.4% |
| 3705407 | 304.47.1.2 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › FAZ1_cons | 0.60 | 30.0 | 4.05e-01 | 75.4% | 94.7% |
| 3608237 | 304.55.2.8 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons | 0.59 | 30.0 | 4.03e-01 | 75.4% | 94.7% |
| 4515869 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.59 | 26.0 | 3.71e-01 | 75.4% | 86.5% |
| 3597457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 31.0 | 4.11e-01 | 75.4% | 97.9% |
| 4048493 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.59 | 26.0 | 3.85e-01 | 75.4% | 96.2% |
| 4182456 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.58 | 27.0 | 3.92e-01 | 74.9% | 97.6% |
| 4469636 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.58 | 27.0 | 3.75e-01 | 76.4% | 92.9% |
| 3720046 | 304.55.2.8 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons | 0.58 | 30.0 | 3.99e-01 | 75.4% | 96.8% |
| 4095823 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.58 | 26.0 | 3.72e-01 | 74.3% | 89.8% |
| 3705400 | 304.31.1.3 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › FAZ1_cons | 0.58 | 30.0 | 3.96e-01 | 75.4% | 95.8% |
| 3595834 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.56 | 32.0 | 3.70e-01 | 71.7% | 77.7% |
| 4953987 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.55 | 36.0 | 4.04e-01 | 95.3% | 85.5% |
| 3959611 | 304.42.1.0 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC | 0.55 | 32.0 | 3.59e-01 | 75.4% | 74.3% |
| 5014476 | 241.1.1.28 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF4268 | 0.55 | 40.0 | 4.48e-01 | 94.2% | 99.3% |
| 4945880 | 304.42.1.1 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC | 0.54 | 31.0 | 3.52e-01 | 75.4% | 71.7% |
| 3508423 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 27.0 | 3.66e-01 | 97.9% | 97.8% |
| 4048122 | 304.9.1.71 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD | 0.52 | 35.0 | 4.18e-01 | 97.9% | 100.0% |
| 5033629 | 304.27.1.1 ↗ | a+b two layers › Alpha-beta plaits › Formiminotransferase domain of formiminotransferase-cyclodeaminase. › Formiminotransferase domain of formiminotransferase-cyclodeaminase. › FTCD | 0.52 | 28.0 | 3.42e-01 | 94.8% | 80.8% |
| 5040747 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.51 | 39.0 | 4.23e-01 | 94.8% | 98.1% |
D2
medium
residues 47-102_315-349
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r31A01 | 3.30.2180.10 | Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like | 0.55 | 21.0 | 2.44e-01 | 96.7% | 43.9% |
| 2o18A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.52 | 39.0 | 2.71e-01 | 79.1% | 73.0% |
| 1yb3A00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 35.0 | 2.97e-01 | 71.4% | 100.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928282 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.60 | 36.0 | 3.34e-01 | 95.6% | 46.2% |
| 4197003 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.56 | 44.0 | 2.96e-01 | 84.6% | 93.5% |
| 3606623 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 30.0 | 3.39e-01 | 70.3% | 72.9% |
| 3981362 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.51 | 36.0 | 3.06e-01 | 80.2% | 42.5% |
| 4979123 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.51 | 39.0 | 3.13e-01 | 82.4% | 93.3% |