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IMGVR_UViG_3300035107_000693-3300035107-Ga0374986_0002799_6701_6841

Arc-Vir

IMGVR_UViG_3300035107_000693-3300035107-Ga0374986_0002799_6701_6841

Identity

Kingdom:
archaea

Quality

77.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-46
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5nmxB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.75 49.0 3.70e-01 82.1% 28.0%
4eqsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 49.0 3.31e-01 94.9% 19.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 57.0 4.86e-01 94.9% 74.6%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 55.0 4.75e-01 92.3% 68.2%
1fcdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 49.0 3.42e-01 94.9% 22.3%
4uoyA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.68 45.0 2.89e-01 82.1% 13.5%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 54.0 4.80e-01 100.0% 66.2%
3aljA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 55.0 3.37e-01 92.3% 16.6%
3tqqA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.66 54.0 4.06e-01 100.0% 50.0%
2ykyB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 49.0 3.14e-01 87.2% 17.5%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.15e-01 94.9% 58.9%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.59 40.0 4.02e-01 87.2% 70.0%
2vh2A02 3.40.50.11690 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cell division protein FtsQ/DivIB 0.59 42.0 3.08e-01 89.7% 24.4%
4i92A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 33.0 2.23e-01 100.0% 13.5%
1jk4A00 2.60.9.10 Mainly Beta › Sandwich › Neurophysin II; Chain A › Neurohypophysial hormone domain 0.51 38.0 3.21e-01 89.7% 53.2%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.50 34.0 2.24e-01 76.9% 26.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054668 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 48.0 4.62e-01 74.4% 57.8%
4445123 6020.1.1.1 ↗ a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.73 51.0 3.50e-01 74.4% 24.8%
3700745 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.25e-01 82.1% 56.0%
3683679 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 46.0 2.70e-01 74.4% 35.8%
3687305 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.67 52.0 2.97e-01 89.7% 8.9%
3726485 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 52.0 2.91e-01 89.7% 34.2%
3740276 7577.1.1.2 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.64 50.0 2.89e-01 87.2% 69.9%
4980170 7577.1.1.2 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.62 47.0 2.84e-01 87.2% 12.0%
4610504 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.62 48.0 2.76e-01 87.2% 9.0%
3495420 5054.1.1.86 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lips 0.58 45.0 3.00e-01 92.3% 82.2%
4014865 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 39.0 2.62e-01 74.4% 68.4%
4120498 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.56 44.0 2.84e-01 92.3% 45.1%
2474138 4.8.1.3 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › 7kD_DNA_binding 0.56 38.0 3.94e-01 94.9% 100.0%
4601962 4952.1.1.2 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic 0.56 41.0 2.53e-01 79.5% 24.9%
4118933 4952.1.1.2 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic 0.55 40.0 2.94e-01 79.5% 53.0%
3546856 11.1.1.852 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.53 44.0 2.96e-01 87.2% 54.3%
None — 0.53 44.0 2.61e-01 97.4% 46.0%
4957143 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.53 36.0 2.65e-01 74.4% 82.2%
4028313 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 34.0 2.18e-01 74.4% 29.2%