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IMGVR_UViG_3300035202_001069-3300035202-Ga0373640_0006906_3_2303

Arc-Vir

IMGVR_UViG_3300035202_001069-3300035202-Ga0373640_0006906_3_2303

Quality

87.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 239-313_417-476
PDB
D2 high residues 539-633
PDB
Domain cluster: representative
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3330182 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.61 47.0 3.98e-01 82.1% 85.6%
5037258 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 43.0 3.56e-01 77.9% 97.2%
3626645 193.1.1.28 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › RLL 0.57 43.0 4.40e-01 84.2% 82.1%
3598779 182.1.1.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain 0.53 39.0 2.70e-01 77.9% 29.5%
D3 medium residues 20-179
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3671241 109.4.1.128 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 0.50 37.0 2.97e-01 75.6% 87.4%
D4 medium residues 199-236_654-766
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00940.25 best RNA_pol 49.5 4.20e-13 53.0% 15.8%
PF00940.25 RNA_pol 36.6 3.40e-09 27.2% 8.7%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3q23A02 3.30.70.2440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.86 41.0 4.21e-01 70.2% 48.3%
1aroP03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.79 60.0 6.09e-01 97.4% 78.7%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 34.0 4.89e-01 97.4% 94.3%
2kyzA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 32.0 4.75e-01 100.0% 94.0%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.70 36.0 4.76e-01 98.0% 90.4%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.70 34.0 3.29e-01 94.7% 41.8%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.70 38.0 4.75e-01 98.7% 86.2%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.69 40.0 4.16e-01 100.0% 59.7%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.69 34.0 4.66e-01 92.7% 92.2%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 36.0 4.33e-01 100.0% 76.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.68 36.0 3.46e-01 100.0% 45.5%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 35.0 4.15e-01 100.0% 72.1%
2kkhA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 33.0 4.49e-01 99.3% 96.0%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.65 30.0 3.92e-01 96.7% 78.8%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.65 31.0 4.06e-01 100.0% 83.5%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 33.0 4.27e-01 100.0% 87.1%
3dgpB00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.64 29.0 4.13e-01 73.5% 98.4%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.63 28.0 3.77e-01 100.0% 82.6%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 33.0 4.04e-01 100.0% 79.6%
1kutB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 27.0 3.44e-01 72.2% 68.5%
6qwtA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.59 35.0 3.68e-01 99.3% 63.1%
5gt8D02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.58 27.0 2.98e-01 100.0% 52.5%
1gpjA01 3.30.460.30 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain 0.57 30.0 3.12e-01 100.0% 51.7%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 29.0 3.68e-01 98.0% 83.0%
1tuaA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 31.0 3.96e-01 94.7% 97.6%
3kreA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 27.0 3.29e-01 74.8% 74.2%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.52 29.0 3.29e-01 96.7% 71.3%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.51 29.0 3.50e-01 97.4% 87.2%
3mk7A00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.50 42.0 2.99e-01 88.1% 91.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3690781 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.92 57.0 7.31e-01 81.5% 100.0%
3207626 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.89 50.0 6.71e-01 70.9% 100.0%
3683037 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.87 61.0 7.18e-01 96.7% 99.1%
3596109 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.84 69.0 7.50e-01 100.0% 99.2%
4220398 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.84 79.0 7.50e-01 97.4% 100.0%
4626202 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.84 59.0 6.92e-01 99.3% 99.1%
4345162 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.79 75.0 7.31e-01 98.0% 100.0%
3245966 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.79 70.0 7.33e-01 99.3% 99.3%
3868177 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.78 74.0 7.30e-01 98.7% 100.0%
5058130 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.75 36.0 5.10e-01 96.0% 94.7%
3289139 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.74 50.0 5.66e-01 100.0% 89.6%
4038014 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.73 38.0 4.90e-01 97.4% 85.6%
5083546 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 35.0 4.75e-01 100.0% 87.5%
4261006 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.73 68.0 6.73e-01 98.0% 100.0%
3688090 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.72 35.0 4.57e-01 71.5% 80.0%
4944787 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.72 37.0 5.11e-01 100.0% 96.2%
4514423 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.72 36.0 5.02e-01 98.0% 98.7%
3485236 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.71 57.0 5.96e-01 100.0% 89.3%
4605419 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.71 38.0 5.03e-01 97.4% 97.5%
4995741 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.70 53.0 5.44e-01 100.0% 81.4%
3714105 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.69 60.0 5.42e-01 89.4% 93.3%
3225952 304.5.1.23 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › V_ATPase_I 0.69 33.0 4.09e-01 100.0% 71.6%
3869516 327.11.2.56 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28453 0.69 32.0 4.59e-01 96.7% 100.0%
3988398 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.68 35.0 4.30e-01 100.0% 77.9%
5047872 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.68 30.0 4.41e-01 100.0% 95.4%
4163010 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.67 35.0 4.34e-01 97.4% 80.0%
5041788 3715.1.1.0 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.66 38.0 4.81e-01 98.0% 94.4%
4949564 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.66 28.0 4.18e-01 99.3% 96.7%
5315 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.66 35.0 4.12e-01 100.0% 74.3%
4235437 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.65 33.0 3.96e-01 100.0% 72.6%
3260113 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.65 39.0 4.55e-01 99.3% 82.7%
3732593 4340.1.1.1 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 0.64 29.0 4.26e-01 93.4% 100.0%
2320836 4340.1.1.1 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 0.63 30.0 4.18e-01 90.7% 97.0%
3713330 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.62 37.0 4.16e-01 83.4% 74.2%
4938256 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 23.0 3.24e-01 96.0% 68.0%
5050501 3715.1.1.1 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.59 35.0 4.27e-01 100.0% 92.6%
3251732 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.59 41.0 3.31e-01 100.0% 39.3%
5008984 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.58 34.0 4.17e-01 89.4% 93.3%
3934202 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 41.0 4.17e-01 100.0% 75.9%
3571315 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.55 42.0 3.57e-01 99.3% 51.1%
4977412 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.54 40.0 4.48e-01 100.0% 97.5%
3210725 109.4.1.2814 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, HEAT_GCN1, TPR_IMB1, TPR_IPO5 0.53 29.0 1.76e-01 96.0% 7.2%
4552467 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.53 46.0 3.52e-01 100.0% 41.2%
4190838 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.53 29.0 3.51e-01 73.5% 80.0%
1186663 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 41.0 3.48e-01 99.3% 51.0%
5054776 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 29.0 3.67e-01 94.7% 100.0%
4869676 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.50 38.0 3.41e-01 99.3% 56.1%
3190723 109.4.1.1506 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_6, TPR_IMB1, TPR_IPO5 0.50 29.0 1.85e-01 94.7% 9.6%
D5 medium residues 315-415
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xubA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 35.0 3.68e-01 88.1% 65.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3563442 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.57 37.0 4.12e-01 91.1% 86.7%
4559316 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.56 37.0 4.28e-01 96.0% 97.1%
3252602 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.53 38.0 2.35e-01 75.2% 34.1%
3905735 101.1.2.94 alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.52 33.0 3.62e-01 91.1% 77.6%