Back to structures

IMGVR_UViG_3300035208_008621-3300035208-Ga0376279_0006428_2_586

Arc-Vir

IMGVR_UViG_3300035208_008621-3300035208-Ga0376279_0006428_2_586

Quality

86.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-96
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00078.33 best RVT_1 31.9 1.70e-07 100.0% 39.5%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.83 75.0 6.16e-01 100.0% 56.2%
2eo5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 44.0 3.71e-01 85.5% 39.9%
1ohvA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 46.0 3.74e-01 85.5% 39.8%
1ft8C01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 40.0 4.60e-01 74.7% 100.0%
1aroP03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 42.0 3.50e-01 71.1% 71.3%
3ipjA01 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.60 43.0 4.40e-01 86.7% 80.0%
2fnaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 44.0 3.34e-01 81.9% 45.8%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 42.0 4.36e-01 84.3% 87.8%
6fdmA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 42.0 3.81e-01 80.7% 91.8%
3dodB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 44.0 3.58e-01 91.6% 45.8%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 3.94e-01 96.4% 95.0%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 39.0 3.58e-01 81.9% 84.1%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.51 33.0 3.38e-01 77.1% 67.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029718 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.95 91.0 5.77e-01 100.0% 24.7%
4937067 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.94 90.0 6.03e-01 100.0% 31.7%
3983816 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.92 86.0 5.87e-01 98.8% 36.4%
3571315 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.85 75.0 5.32e-01 100.0% 34.0%
4434853 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.84 76.0 5.35e-01 97.6% 34.2%
3935908 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.83 74.0 6.42e-01 100.0% 64.8%
3939861 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.83 73.0 6.43e-01 100.0% 66.7%
3674655 2003.1.9.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.82 67.0 3.98e-01 88.0% 12.6%
3643305 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.82 71.0 5.93e-01 100.0% 57.0%
3504869 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.81 67.0 4.94e-01 100.0% 35.7%
3272304 304.36.1.2 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › RVT_1 0.79 72.0 5.94e-01 100.0% 66.9%
3519367 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.79 61.0 4.93e-01 81.9% 47.3%
3276262 304.36.1.2 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › RVT_1 0.78 65.0 6.02e-01 90.4% 92.4%
3927940 304.36.1.2 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › RVT_1 0.78 71.0 6.53e-01 100.0% 86.7%
4543273 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.78 57.0 6.27e-01 79.5% 98.5%
3306150 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.77 66.0 5.12e-01 100.0% 44.0%
4001843 304.4.1.51 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › RVT_1 0.75 67.0 5.77e-01 98.8% 81.5%
3386186 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.74 59.0 5.91e-01 84.3% 85.9%
4598960 304.36.1.0 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like 0.73 56.0 5.98e-01 81.9% 95.7%
5016606 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 53.0 4.45e-01 78.3% 45.7%
3230011 6106.1.1.0 extended segments › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY 0.68 47.0 4.75e-01 72.3% 74.1%
4975021 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.68 56.0 5.55e-01 91.6% 98.9%
5012054 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.68 51.0 5.51e-01 80.7% 97.1%
4025632 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.66 45.0 4.76e-01 71.1% 84.0%
4932518 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.65 52.0 5.04e-01 86.7% 84.2%
4528041 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.63 40.0 4.52e-01 75.9% 88.3%
4954531 2004.1.1.152 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KAP_NTPase 0.62 45.0 3.32e-01 77.1% 83.0%
5054548 327.11.1.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.62 46.0 4.99e-01 83.1% 100.0%
3557902 101.1.2.580 alpha arrays › HTH › HTH › winged helix domain › DEPDC5_CTD 0.60 45.0 4.30e-01 81.9% 100.0%
4329193 601.7.1.8 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas_Csm6_HEPN 0.59 42.0 3.34e-01 73.5% 59.4%
4288869 327.10.1.11 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NII 0.58 48.0 4.95e-01 97.6% 100.0%
5025213 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.56 49.0 3.39e-01 98.8% 99.0%
4978597 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.56 40.0 3.10e-01 75.9% 65.4%
5044483 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 37.0 3.52e-01 100.0% 58.0%
5061540 2498.1.1.147 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF7897 0.55 43.0 2.92e-01 85.5% 60.3%
3579065 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.54 38.0 3.06e-01 75.9% 49.4%
5052406 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.53 42.0 3.38e-01 90.4% 96.1%
4009354 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.52 34.0 3.34e-01 78.3% 61.1%
3786162 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 32.0 3.06e-01 95.2% 54.7%
D2 high residues 104-187
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.68 45.0 4.32e-01 73.8% 58.0%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.68 47.0 4.87e-01 72.6% 94.9%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 47.0 4.35e-01 72.6% 83.0%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 49.0 4.41e-01 77.4% 82.1%
1tjcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 54.0 5.27e-01 97.6% 81.1%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 46.0 4.84e-01 73.8% 94.7%
2pbeA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.66 48.0 4.16e-01 76.2% 97.6%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.66 48.0 4.45e-01 77.4% 86.0%
1zeeA01 1.20.58.600 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 56.0 5.05e-01 100.0% 96.6%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 45.0 4.55e-01 76.2% 93.0%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.63 45.0 4.70e-01 86.9% 85.1%
3ccyA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 46.0 3.88e-01 78.6% 91.8%
2jpnA00 1.20.1280.210 Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 0.62 44.0 4.56e-01 77.4% 79.7%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 44.0 4.68e-01 79.8% 98.6%
6axgA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.60 49.0 4.83e-01 94.0% 98.9%
3dcfA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 47.0 4.03e-01 88.1% 66.2%
7r0kB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 49.0 3.56e-01 94.0% 41.7%
2yx8A00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.58 42.0 4.26e-01 76.2% 90.1%
3draA00 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.58 51.0 3.54e-01 100.0% 28.1%
4x28A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.56 44.0 4.01e-01 85.7% 81.4%
3gz1A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 47.0 4.06e-01 100.0% 70.1%
4muoA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.55 38.0 4.06e-01 82.1% 87.5%
1z5zA02 1.20.120.850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain 0.52 35.0 3.66e-01 73.8% 76.3%
2pihA00 1.20.1500.10 Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like 0.50 36.0 3.18e-01 97.6% 51.2%
3ce9A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.50 44.0 3.41e-01 100.0% 76.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3488968 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.72 54.0 5.26e-01 81.0% 81.1%
3602716 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.69 51.0 4.45e-01 77.4% 77.6%
4946565 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 49.0 4.37e-01 77.4% 94.1%
3232756 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.65 52.0 5.25e-01 88.1% 100.0%
3633281 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 55.0 3.85e-01 96.4% 38.0%
3354262 109.7.1.20 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › TPR_1 0.63 50.0 5.17e-01 100.0% 93.8%
3808386 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 53.0 3.96e-01 96.4% 58.2%
3873232 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.62 34.0 3.50e-01 91.7% 56.2%
3576710 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 46.0 4.66e-01 85.7% 81.2%
3387473 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.57 46.0 3.96e-01 85.7% 66.2%
3917769 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 49.0 3.92e-01 100.0% 52.6%
3515268 186.2.1.0 alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain 0.55 42.0 3.99e-01 88.1% 67.6%
5052957 169.1.1.1 alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.53 38.0 2.57e-01 79.8% 47.3%
3971665 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.50 33.0 3.53e-01 89.3% 77.3%