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IMGVR_UViG_3300035338_000008-3300035338-Ga0119852_00494_9966_10175

Arc-Vir

IMGVR_UViG_3300035338_000008-3300035338-Ga0119852_00494_9966_10175

Identity

Kingdom:
archaea

Quality

76.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-63
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e9sA02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.68 54.0 4.15e-01 95.8% 55.6%
3t6pA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 55.0 5.10e-01 97.9% 71.2%
4p16A02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.65 52.0 3.99e-01 95.8% 55.1%
7f0uA01 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.64 50.0 4.21e-01 95.8% 71.6%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 51.0 4.10e-01 100.0% 54.0%
7zhgO01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 49.0 4.61e-01 100.0% 92.4%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.62 42.0 4.03e-01 70.8% 92.7%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.62 52.0 4.37e-01 100.0% 63.2%
5l3wA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.62 51.0 4.34e-01 97.9% 66.7%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.61 49.0 4.47e-01 100.0% 89.0%
7osfB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 49.0 3.35e-01 100.0% 41.5%
4q6lA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.61 45.0 3.40e-01 85.4% 50.4%
3lewA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 45.0 2.76e-01 91.7% 12.1%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.61 47.0 4.20e-01 100.0% 74.1%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 49.0 4.14e-01 95.8% 69.3%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 40.0 3.73e-01 72.9% 52.4%
4k7jA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.60 46.0 3.08e-01 91.7% 81.4%
2lfhA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.60 41.0 3.78e-01 87.5% 52.9%
2x49A03 1.10.8.540 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 0.58 46.0 3.96e-01 97.9% 55.6%
1bedA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 46.0 3.29e-01 97.9% 28.2%
5jzxD02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 48.0 3.52e-01 100.0% 80.1%
5dicA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.58 47.0 3.72e-01 100.0% 53.0%
3idwA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.57 45.0 4.21e-01 95.8% 74.2%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 44.0 3.84e-01 95.8% 77.4%
3rpzA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 43.0 2.71e-01 91.7% 85.2%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.53 43.0 3.68e-01 97.9% 67.4%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.53 36.0 2.55e-01 75.0% 19.6%
4l0fA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 46.0 2.66e-01 97.9% 11.2%
2xz2A00 1.20.960.50 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Cleavage stimulation factor subunit 1, dimerisation domain 0.53 37.0 3.37e-01 72.9% 56.1%
1dzuP00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.52 44.0 2.95e-01 100.0% 81.3%
2gs4A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 41.0 3.01e-01 97.9% 84.2%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.51 42.0 3.67e-01 97.9% 60.8%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 37.0 3.05e-01 77.1% 66.7%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5035482 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.76 66.0 6.01e-01 100.0% 78.5%
4956662 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.75 66.0 4.90e-01 100.0% 43.3%
3918837 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.75 64.0 5.49e-01 100.0% 66.3%
3547911 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.74 63.0 5.32e-01 100.0% 62.4%
3918298 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.74 63.0 5.55e-01 100.0% 70.7%
3614894 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.73 62.0 4.33e-01 100.0% 31.8%
3712067 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.71 60.0 5.00e-01 100.0% 67.8%
5070095 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.70 60.0 4.73e-01 100.0% 55.2%
3931967 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.70 58.0 5.01e-01 97.9% 65.0%
4170883 103.7.1.2 ↗ alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › DUF494 0.69 60.0 4.75e-01 100.0% 52.0%
4361639 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.69 58.0 5.03e-01 100.0% 67.1%
4606468 101.35.1.21 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF494 0.69 58.0 4.81e-01 100.0% 57.8%
5016168 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.69 58.0 5.00e-01 100.0% 78.8%
3821041 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.68 46.0 2.96e-01 83.3% 14.5%
3724166 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.67 45.0 4.13e-01 87.5% 52.3%
4972876 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.67 57.0 4.26e-01 100.0% 43.1%
4366692 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.67 56.0 4.85e-01 100.0% 80.0%
5072380 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.66 55.0 4.44e-01 97.9% 61.0%
3965492 101.35.1.21 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF494 0.65 55.0 4.84e-01 100.0% 70.7%
4260463 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.65 44.0 4.52e-01 91.7% 75.6%
3703373 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 54.0 3.52e-01 100.0% 20.4%
4097350 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 56.0 5.13e-01 100.0% 80.0%
4428371 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.64 44.0 4.57e-01 89.6% 77.8%
3937985 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.64 50.0 4.96e-01 100.0% 96.4%
3219331 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.63 52.0 4.50e-01 100.0% 92.9%
3463735 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.63 43.0 4.14e-01 79.2% 61.8%
3276922 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.63 55.0 5.31e-01 100.0% 85.5%
4939455 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.63 51.0 4.86e-01 100.0% 85.0%
4665959 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.63 50.0 4.76e-01 97.9% 83.3%
3830143 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.62 51.0 4.40e-01 100.0% 77.4%
5037883 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 49.0 4.62e-01 91.7% 75.0%
4148498 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.61 48.0 4.80e-01 95.8% 100.0%
3352144 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 39.0 3.14e-01 72.9% 32.0%
3614319 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 50.0 4.48e-01 100.0% 87.1%
4362811 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 39.0 3.81e-01 77.1% 61.8%
3949333 148.1.3.172 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 0.58 48.0 4.22e-01 100.0% 76.2%
3594075 308.1.1.0 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.58 40.0 3.42e-01 72.9% 66.3%
4317543 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.56 44.0 3.08e-01 87.5% 43.0%
3594149 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 45.0 4.09e-01 100.0% 69.3%
3370052 101.46.1.1 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N 0.56 39.0 3.08e-01 81.2% 33.3%
4236132 3254.1.1.1 ↗ alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.56 45.0 3.83e-01 97.9% 54.4%
3229994 105.1.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.55 44.0 3.97e-01 89.6% 64.6%
3738669 101.46.1.0 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain 0.55 39.0 2.97e-01 81.2% 31.3%
3580501 101.46.1.1 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N 0.55 38.0 2.98e-01 75.0% 33.6%
3599273 3092.1.1.0 ↗ alpha arrays › yeast protein YOR252W › yeast protein YOR252W › yeast protein YOR252W 0.55 38.0 2.78e-01 77.1% 81.3%
3330730 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.52 44.0 2.83e-01 95.8% 18.8%
3702846 308.1.1.1 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.51 45.0 4.00e-01 100.0% 90.0%
4990030 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 2.81e-01 95.8% 96.9%