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IMGVR_UViG_3300035436_000274-3300035436-Ga0394079_23898_14553_15290
Arc-VirIMGVR_UViG_3300035436_000274-3300035436-Ga0394079_23898_14553_15290
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-74
D2
medium
residues 100-180
Domain cluster:
rep: IMGVR_UViG_650716054_000001-650716054-650798108__D17-95
D3
medium
residues 181-245
Domain cluster:
rep: MH825712.1__AYD87310.1__SEA_VALENTINIPUFF_6__00006__D248-311
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bzcA02 | 1.10.3500.10 | Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like | 0.67 | 54.0 | 3.63e-01 | 90.8% | 23.8% |
| 3doaA03 | 3.40.970.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like | 0.64 | 42.0 | 4.69e-01 | 98.5% | 100.0% |
| 2kr7A01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 43.0 | 3.86e-01 | 86.2% | 87.2% |
| 6v55A01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.55 | 43.0 | 3.61e-01 | 86.2% | 70.5% |
| 4n5uA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.62e-01 | 92.3% | 52.8% |
| 1kdjA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 39.0 | 3.49e-01 | 81.5% | 54.9% |
| 3smzA03 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 42.0 | 3.83e-01 | 93.8% | 91.8% |
| 2qfeA00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 3.33e-01 | 87.7% | 42.4% |
| 2b5iC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.67e-01 | 92.3% | 60.4% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.51 | 38.0 | 3.63e-01 | 84.6% | 100.0% |
| 3unpA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 38.0 | 2.81e-01 | 83.1% | 49.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964369 | 6108.1.1.8 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Phage_Mu_F | 0.84 | 68.0 | 4.45e-01 | 86.2% | 22.4% |
| 3946757 | 601.19.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F | 0.78 | 59.0 | 4.04e-01 | 81.5% | 24.9% |
| 4032640 | 601.19.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F | 0.75 | 62.0 | 3.92e-01 | 89.2% | 18.7% |
| 4031329 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.70 | 53.0 | 3.73e-01 | 83.1% | 28.1% |
| 3763329 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.59 | 44.0 | 4.08e-01 | 83.1% | 100.0% |
| 4019120 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 44.0 | 2.58e-01 | 84.6% | 13.5% |
| 3634098 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 41.0 | 2.40e-01 | 87.7% | 10.1% |
| 3222808 | 5001.1.1.52 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › SID-1_RNA_chan | 0.53 | 40.0 | 3.29e-01 | 84.6% | 78.5% |
| 3459807 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.52 | 39.0 | 3.21e-01 | 83.1% | 73.1% |
| 3387903 | 11.1.1.449 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2393 | 0.51 | 40.0 | 3.48e-01 | 84.6% | 98.0% |
| 3279593 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.51 | 38.0 | 3.10e-01 | 83.1% | 68.1% |
| 3582280 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 38.0 | 3.15e-01 | 86.2% | 62.2% |
| 3634341 | 11.1.3.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like | 0.50 | 41.0 | 3.09e-01 | 92.3% | 55.3% |