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IMGVR_UViG_3300035488_000084-3300035488-Ga0394027_20417_821_976

Arc-Vir

IMGVR_UViG_3300035488_000084-3300035488-Ga0394027_20417_821_976

Identity

Kingdom:
archaea

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-49
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 53.0 4.01e-01 86.0% 90.0%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 53.0 3.14e-01 95.3% 33.4%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 41.0 4.21e-01 100.0% 74.4%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.61 47.0 2.96e-01 86.0% 18.4%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.61 44.0 3.63e-01 100.0% 41.6%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.61 48.0 3.25e-01 90.7% 79.0%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 3.81e-01 97.7% 67.9%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.43e-01 100.0% 33.0%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.59 41.0 3.69e-01 100.0% 50.0%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 41.0 3.04e-01 100.0% 24.8%
3o2zF00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 49.0 4.14e-01 100.0% 72.7%
4mx8C01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.58 42.0 2.87e-01 86.0% 76.2%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.27e-01 100.0% 30.6%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 48.0 3.54e-01 93.0% 44.3%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 45.0 3.54e-01 100.0% 42.3%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 46.0 2.72e-01 100.0% 33.9%
3es1A01 2.20.70.150 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 37.0 3.90e-01 97.7% 83.8%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 42.0 2.69e-01 90.7% 59.8%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 45.0 3.49e-01 100.0% 80.0%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.54 46.0 3.13e-01 100.0% 30.7%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 36.0 2.34e-01 72.1% 88.1%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.13e-01 100.0% 32.3%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 42.0 2.70e-01 93.0% 62.2%
7kseA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 36.0 2.69e-01 100.0% 22.6%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.53 39.0 3.87e-01 100.0% 82.6%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 41.0 3.01e-01 90.7% 81.9%
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.52 43.0 3.61e-01 93.0% 84.0%
4perB00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.52 41.0 3.21e-01 95.3% 37.6%
3l81A01 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.52 41.0 3.02e-01 95.3% 94.3%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 36.0 2.63e-01 81.4% 72.9%
1pgl100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 2.84e-01 100.0% 40.5%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 40.0 3.17e-01 93.0% 71.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3343216 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.75 52.0 3.83e-01 100.0% 26.7%
3588825 2004.1.1.552 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C 0.73 50.0 2.83e-01 74.4% 12.5%
3302022 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.71 50.0 3.84e-01 97.7% 33.0%
3212609 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.70 59.0 4.47e-01 100.0% 74.5%
5037264 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 53.0 4.43e-01 100.0% 46.3%
4159896 2003.1.1.59 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.69 55.0 3.17e-01 90.7% 91.5%
3840002 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.68 53.0 3.60e-01 93.0% 51.9%
3872696 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.65 44.0 4.36e-01 95.3% 66.7%
3456245 330.1.1.7 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsRBD2 0.64 45.0 3.17e-01 100.0% 22.2%
3605122 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.63 54.0 3.90e-01 100.0% 45.6%
3703249 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.62 54.0 3.87e-01 100.0% 44.5%
3251381 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.62 44.0 3.87e-01 100.0% 49.2%
3324497 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.62 44.0 3.29e-01 97.7% 27.8%
3422969 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.62 44.0 3.33e-01 100.0% 28.6%
4309730 7559.1.1.1 ↗ a/b three-layered sandwiches › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal_L4 0.62 51.0 3.31e-01 100.0% 55.8%
5050550 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 51.0 3.76e-01 97.7% 74.2%
3961892 243.1.1.77 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.61 49.0 3.58e-01 100.0% 30.7%
3268650 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 49.0 3.55e-01 97.7% 48.6%
5020005 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.60 46.0 4.00e-01 100.0% 52.0%
3938676 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.57 51.0 2.93e-01 97.7% 89.5%
4190111 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.57 52.0 3.21e-01 100.0% 42.8%
3998845 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.57 52.0 2.99e-01 97.7% 88.5%
3555682 109.4.1.1397 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_C, PF29376 0.57 41.0 2.31e-01 86.0% 5.4%
3649132 109.4.1.888 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_N 0.57 41.0 2.38e-01 88.4% 7.4%
5051354 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 43.0 3.41e-01 86.0% 84.2%
3788285 395.1.1.4 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.56 45.0 4.39e-01 100.0% 88.0%
4204046 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 46.0 3.44e-01 100.0% 40.8%
3553055 10.32.1.196 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › WLS_GOLD 0.55 42.0 2.92e-01 95.3% 48.6%
3819014 243.3.1.47 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7074 0.55 43.0 3.66e-01 100.0% 48.8%
3734626 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.54 45.0 2.85e-01 93.0% 50.9%
2581460 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.54 37.0 2.54e-01 100.0% 17.4%
3235779 109.4.1.890 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C 0.53 38.0 2.26e-01 86.0% 8.7%
3969671 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.53 40.0 2.46e-01 86.0% 68.3%
3644046 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.53 36.0 3.23e-01 74.4% 78.5%
3497221 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 43.0 3.03e-01 95.3% 94.3%
5050651 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 41.0 3.18e-01 88.4% 85.0%
3511109 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 43.0 3.56e-01 97.7% 67.1%
5060622 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 35.0 2.91e-01 81.4% 90.5%
3997943 109.4.1.1580 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.51 37.0 2.10e-01 88.4% 5.9%
None — 0.51 39.0 2.32e-01 88.4% 63.6%
4962082 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.51 41.0 2.62e-01 93.0% 60.0%