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IMGVR_UViG_3300035524_000102-3300035524-Ga0376486_004181_3218_4312

Arc-Vir

IMGVR_UViG_3300035524_000102-3300035524-Ga0376486_004181_3218_4312

Identity

Kingdom:
archaea

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 252-351
PDB
Domain cluster: rep: IMGVR_UViG_3300035528_000047-3300035528-Ga0376490_000042_1500_4262__D234-325
D2 medium residues 33-93_192-211
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.74 61.0 4.64e-01 87.7% 92.6%
5yv7A00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.63 33.0 3.69e-01 74.1% 65.0%
1aalB00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.60 32.0 3.71e-01 77.8% 71.9%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.60 31.0 3.67e-01 74.1% 72.2%
4ntwB00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.60 32.0 3.65e-01 76.5% 69.5%
6q61A00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.60 32.0 3.64e-01 76.5% 69.5%
1tocR02 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.56 30.0 3.37e-01 76.5% 69.0%
1d0nA03 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 38.0 3.37e-01 80.2% 47.9%
4ccjA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.55 43.0 3.18e-01 88.9% 67.1%
1vkzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 37.0 3.93e-01 75.3% 91.4%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 4.01e-01 87.7% 84.8%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 3.00e-01 74.1% 66.0%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.50e-01 93.8% 96.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989046 862.1.1.8 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE 0.86 73.0 5.14e-01 90.1% 81.3%
7175 862.1.1.2 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DUF1882 0.74 61.0 4.64e-01 87.7% 92.6%
4224271 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.60 33.0 3.66e-01 77.8% 66.7%
3752218 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.60 32.0 3.47e-01 76.5% 58.6%
3921413 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.60 33.0 3.48e-01 77.8% 57.3%
3847541 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.59 34.0 3.59e-01 77.8% 62.9%
3531267 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.59 32.0 3.33e-01 77.8% 55.4%
3224393 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.59 33.0 3.15e-01 77.8% 45.3%
3506658 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.58 32.0 3.55e-01 77.8% 66.2%
3927982 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 4.17e-01 81.5% 88.4%
3993545 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.58 32.0 3.65e-01 77.8% 73.3%
3214785 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.58 33.0 3.63e-01 79.0% 69.2%
3472060 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.57 32.0 3.54e-01 79.0% 67.7%
3903112 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.57 34.0 3.70e-01 77.8% 72.3%
3216548 10.12.1.40 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.56 44.0 2.97e-01 88.9% 47.0%
4192204 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.56 34.0 3.79e-01 72.8% 81.7%
1692156 10.12.1.40 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.54 43.0 2.95e-01 88.9% 49.8%
3637664 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.54 38.0 3.41e-01 74.1% 87.5%
4677975 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.54 40.0 3.55e-01 79.0% 78.0%
4030365 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.53 36.0 3.34e-01 70.4% 54.3%
3280029 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 40.0 3.46e-01 87.7% 60.0%
D3 medium residues 94-191_212-251
PDB
Domain cluster: rep: IMGVR_UViG_3300035528_000047-3300035528-Ga0376490_000042_1500_4262__D55-202
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22548.3 best AEP-TOTE 27.8 2.60e-06 73.9% 30.9%