←Back to structures

IMGVR_UViG_3300035528_000047-3300035528-Ga0376490_000042_10933_11676

Arc-Vir

IMGVR_UViG_3300035528_000047-3300035528-Ga0376490_000042_10933_11676

Identity

Kingdom:
archaea

Quality

83.9 mean pLDDT

Cluster

View cluster (83 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-117
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zo9A01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.79 64.0 4.21e-01 87.3% 44.7%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 39.0 4.10e-01 97.5% 60.6%
4od4A01 1.10.357.140 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase 0.68 58.0 4.68e-01 94.9% 71.2%
3tc1B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.66 58.0 3.94e-01 100.0% 73.1%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.65 47.0 4.03e-01 77.2% 86.5%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.64 50.0 4.61e-01 84.8% 84.2%
3kb9A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 52.0 3.42e-01 97.5% 91.2%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 50.0 3.43e-01 98.7% 48.9%
7wivA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 44.0 2.98e-01 83.5% 45.9%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.54 35.0 3.79e-01 84.8% 79.4%
1hm7B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 45.0 3.11e-01 100.0% 49.5%
1x46A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 38.0 3.10e-01 78.5% 92.0%
5bn3A04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.51 39.0 3.30e-01 88.6% 46.0%
3nf2A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 45.0 2.97e-01 100.0% 61.2%
3g80A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 36.0 3.73e-01 100.0% 79.5%
4b4yA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 37.0 3.13e-01 81.0% 57.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3440522 5069.1.3.12 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF6490 0.67 46.0 4.37e-01 70.9% 77.9%
4226297 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.66 49.0 4.22e-01 78.5% 78.4%
3670976 603.1.1.5 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.66 54.0 4.41e-01 88.6% 77.2%
3675934 3755.3.1.374 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › UCP030365 0.66 45.0 3.56e-01 70.9% 86.9%
3934485 5059.1.1.38 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Mg_trans_NIPA 0.65 53.0 3.57e-01 89.9% 34.6%
5072366 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.64 52.0 3.68e-01 89.9% 70.6%
3492168 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 42.0 3.08e-01 74.7% 43.7%
4224436 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 42.0 2.88e-01 77.2% 39.6%
4996722 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.56 40.0 3.73e-01 73.4% 63.2%
3243110 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 41.0 3.31e-01 79.7% 86.3%
3712866 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 45.0 3.97e-01 86.1% 99.1%
4304214 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.54 43.0 3.81e-01 86.1% 91.3%
3186748 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 37.0 2.83e-01 72.2% 37.2%
4039355 2004.1.1.258 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2 0.53 39.0 2.56e-01 77.2% 66.3%
157502 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.51 38.0 3.10e-01 78.5% 92.0%
3631951 3755.3.1.355 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uds1 0.51 42.0 3.41e-01 86.1% 70.0%
D2 medium residues 118-244
PDB
Domain cluster: rep: IMGVR_UViG_3300028034_000003-3300028034-Ga0247721_10005792__D3-123