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IMGVR_UViG_3300035528_000047-3300035528-Ga0376490_000042_24417_24695
Arc-VirIMGVR_UViG_3300035528_000047-3300035528-Ga0376490_000042_24417_24695
Identity
- Kingdom:
- archaea
Quality
84.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-91
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g5gX02 | 1.10.8.760 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 | 0.68 | 41.0 | 4.91e-01 | 74.7% | 93.2% |
| 2ma3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 37.0 | 3.79e-01 | 86.8% | 63.6% |
| 2zm5A02 | 1.10.20.140 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.58 | 42.0 | 4.64e-01 | 85.7% | 97.2% |
| 4chgA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.56 | 47.0 | 4.19e-01 | 92.3% | 94.7% |
| 4u04B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 33.0 | 3.38e-01 | 89.0% | 61.4% |
| 3dp7B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 34.0 | 3.46e-01 | 82.4% | 61.3% |
| 6nklB00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.53 | 43.0 | 3.82e-01 | 89.0% | 93.3% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.51 | 42.0 | 3.40e-01 | 92.3% | 83.9% |
| 4pklA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 45.0 | 4.21e-01 | 96.7% | 86.4% |
| 3rlfG01 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.50 | 38.0 | 2.80e-01 | 83.5% | 31.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4311571 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.61 | 38.0 | 3.62e-01 | 89.0% | 51.8% |
| 3783259 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 34.0 | 3.21e-01 | 91.2% | 50.9% |
| 4162677 | 1198.1.1.0 ↗ | alpha bundles › BTA121 › BTA121 › BTA121 | 0.54 | 43.0 | 4.11e-01 | 87.9% | 84.5% |
| 3794793 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.53 | 39.0 | 2.73e-01 | 78.0% | 56.1% |
| 4657878 | 185.1.1.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl | 0.51 | 30.0 | 3.10e-01 | 71.4% | 56.7% |
| 3581256 | 195.1.1.3 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NSUN5_N | 0.51 | 43.0 | 3.89e-01 | 94.5% | 76.2% |
| 4967801 | 3921.1.1.1 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr | 0.50 | 38.0 | 3.08e-01 | 82.4% | 75.1% |