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IMGVR_UViG_3300035528_000047-3300035528-Ga0376490_000042_44719_46041
Arc-VirIMGVR_UViG_3300035528_000047-3300035528-Ga0376490_000042_44719_46041
Identity
- Kingdom:
- archaea
Quality
62.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-188
Domain cluster:
rep: IMGVR_UViG_3300026311_000146-3300026311-Ga0209723_100647318__D183-300
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.70 | 37.0 | 4.56e-01 | 81.1% | 80.2% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 32.0 | 3.80e-01 | 81.8% | 70.7% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.62 | 37.0 | 4.06e-01 | 70.6% | 71.8% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.61 | 35.0 | 3.96e-01 | 70.6% | 73.4% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.61 | 32.0 | 4.06e-01 | 79.0% | 87.7% |
| 1mwyA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 31.0 | 4.20e-01 | 79.7% | 95.9% |
| 2cqiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 33.0 | 3.84e-01 | 81.8% | 72.8% |
| 1h3gA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 37.0 | 4.53e-01 | 92.3% | 97.8% |
| 4pbdA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 39.0 | 4.54e-01 | 72.7% | 92.2% |
| 1cc8A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 29.0 | 3.86e-01 | 72.7% | 88.9% |
| 1wg1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 30.0 | 3.95e-01 | 79.7% | 93.0% |
| 2jsxA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 29.0 | 3.98e-01 | 79.7% | 95.8% |
| 2gqqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 31.0 | 3.92e-01 | 80.4% | 85.9% |
| 2p5vA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.57 | 30.0 | 3.82e-01 | 81.1% | 85.7% |
| 3hx9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 32.0 | 3.72e-01 | 88.8% | 78.6% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.56 | 36.0 | 3.86e-01 | 70.6% | 75.4% |
| 4aybL00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.55 | 33.0 | 3.95e-01 | 95.8% | 91.2% |
| 2k8qA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 41.0 | 4.23e-01 | 93.7% | 82.1% |
| 4q97A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 38.0 | 4.19e-01 | 90.9% | 91.7% |
| 2r4fA03 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.55 | 37.0 | 4.01e-01 | 79.0% | 82.9% |
| 1a6aB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 36.0 | 4.13e-01 | 91.6% | 95.9% |
| 4rsvA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 33.0 | 3.95e-01 | 90.9% | 94.4% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 4.18e-01 | 91.6% | 97.1% |
| 1xzpB00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.53 | 37.0 | 3.90e-01 | 87.4% | 77.9% |
| 3pv7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 4.06e-01 | 91.6% | 98.9% |
| 4q9cA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 4.03e-01 | 90.9% | 94.3% |
| 4o5lL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.96e-01 | 90.9% | 92.3% |
| 1ie0A00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.53 | 44.0 | 4.34e-01 | 89.5% | 86.5% |
| 3i3wA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.53 | 30.0 | 3.80e-01 | 72.0% | 100.0% |
| 5eo9A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 4.01e-01 | 90.9% | 92.5% |
| 1j6wA00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.52 | 44.0 | 4.22e-01 | 88.8% | 85.7% |
| 1cqkA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.99e-01 | 90.2% | 97.0% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.52 | 31.0 | 3.76e-01 | 72.0% | 94.3% |
| 2v94B00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 33.0 | 3.95e-01 | 86.0% | 96.8% |
| 2grvA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.52 | 38.0 | 4.15e-01 | 76.2% | 100.0% |
| 2od4B01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.70e-01 | 80.4% | 94.4% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 25.0 | 3.19e-01 | 86.0% | 83.8% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3166306 | 50.1.1.4 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 | 0.83 | 66.0 | 6.46e-01 | 82.5% | 92.2% |
| 3964948 | 1.1.16.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 | 0.81 | 62.0 | 6.61e-01 | 81.8% | 91.2% |
| 5003309 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.79 | 62.0 | 6.52e-01 | 81.1% | 93.8% |
| 3602442 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.75 | 57.0 | 6.43e-01 | 81.1% | 100.0% |
| 3286392 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.75 | 43.0 | 4.50e-01 | 83.9% | 62.3% |
| 4006501 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.73 | 43.0 | 4.24e-01 | 83.2% | 55.0% |
| 3955604 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.73 | 43.0 | 4.28e-01 | 83.9% | 56.0% |
| 3568840 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.70 | 39.0 | 4.74e-01 | 80.4% | 82.1% |
| 3997269 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.70 | 41.0 | 4.75e-01 | 80.4% | 79.6% |
| 3394046 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.70 | 39.0 | 4.71e-01 | 80.4% | 82.1% |
| 4257535 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.68 | 41.0 | 4.50e-01 | 71.3% | 73.0% |
| 3163728 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.67 | 44.0 | 4.93e-01 | 83.2% | 85.5% |
| 3995117 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.66 | 35.0 | 4.19e-01 | 81.8% | 75.8% |
| 3965226 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.66 | 45.0 | 4.84e-01 | 83.9% | 80.0% |
| 4980881 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.64 | 34.0 | 4.23e-01 | 72.0% | 83.5% |
| 3784165 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.64 | 36.0 | 4.34e-01 | 82.5% | 85.6% |
| 4889080 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.63 | 44.0 | 4.59e-01 | 83.9% | 76.5% |
| 3214011 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.63 | 41.0 | 4.49e-01 | 88.8% | 80.0% |
| 4913403 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.62 | 42.0 | 4.89e-01 | 82.5% | 96.2% |
| 160389 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.61 | 37.0 | 4.02e-01 | 70.6% | 70.7% |
| 2137681 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.61 | 37.0 | 4.14e-01 | 70.6% | 78.0% |
| 3924220 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 43.0 | 4.84e-01 | 91.6% | 97.1% |
| 3496728 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 31.0 | 3.84e-01 | 80.4% | 77.8% |
| 4985395 | 304.4.1.75 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD | 0.60 | 31.0 | 4.12e-01 | 79.0% | 93.3% |
| 4034536 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 31.0 | 4.12e-01 | 79.7% | 93.3% |
| 3479172 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 34.0 | 4.22e-01 | 83.9% | 91.8% |
| 3467248 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 32.0 | 4.06e-01 | 80.4% | 91.1% |
| 3426505 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 32.0 | 3.59e-01 | 80.4% | 66.4% |
| 5034097 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 33.0 | 4.13e-01 | 79.0% | 91.8% |
| 5026237 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 30.0 | 3.80e-01 | 81.1% | 82.4% |
| 3236827 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.58 | 39.0 | 4.12e-01 | 81.8% | 77.6% |
| 3515518 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.57 | 39.0 | 4.15e-01 | 81.8% | 78.4% |
| 3434184 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 32.0 | 3.58e-01 | 80.4% | 67.5% |
| 3986531 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.57 | 43.0 | 4.40e-01 | 88.8% | 80.7% |
| 5017989 | 304.4.1.82 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 | 0.56 | 27.0 | 3.35e-01 | 81.1% | 72.2% |
| 3968189 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.56 | 45.0 | 4.77e-01 | 88.8% | 96.0% |
| 2736875 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.55 | 45.0 | 4.00e-01 | 83.9% | 66.8% |
| 5033573 | 304.4.1.75 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD | 0.55 | 32.0 | 3.80e-01 | 79.7% | 84.2% |
| 3968188 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.54 | 44.0 | 4.58e-01 | 85.3% | 92.6% |
| 5000612 | 304.19.1.0 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain | 0.54 | 28.0 | 3.68e-01 | 80.4% | 97.1% |
| 4973571 | 304.4.1.82 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 | 0.54 | 28.0 | 3.51e-01 | 79.0% | 81.2% |
| 3726519 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.54 | 31.0 | 3.85e-01 | 90.2% | 98.8% |
| 4182456 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.53 | 32.0 | 3.93e-01 | 73.4% | 98.8% |
| 4571276 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.53 | 30.0 | 3.87e-01 | 73.4% | 100.0% |
| 4342044 | 309.1.1.3 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › LuxS | 0.53 | 44.0 | 4.17e-01 | 88.8% | 81.7% |
| 4074461 | 309.1.1.3 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › LuxS | 0.53 | 44.0 | 4.18e-01 | 89.5% | 81.2% |
| 4198784 | 309.1.1.3 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › LuxS | 0.52 | 43.0 | 4.24e-01 | 88.8% | 87.3% |
| 5002952 | 304.4.1.82 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 | 0.52 | 26.0 | 3.27e-01 | 79.0% | 76.7% |
| 4990940 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.51 | 31.0 | 3.82e-01 | 80.4% | 100.0% |
| 5021963 | 304.8.1.116 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3303 | 0.51 | 27.0 | 3.07e-01 | 79.7% | 65.7% |
| 3258538 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 31.0 | 2.59e-01 | 86.0% | 33.2% |
| 4939738 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.50 | 30.0 | 3.79e-01 | 72.0% | 100.0% |
D2
high
residues 215-301
D3
medium
residues 305-370
Domain cluster:
representative