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IMGVR_UViG_3300035528_000047-3300035528-Ga0376490_000042_58991_59482

Arc-Vir

IMGVR_UViG_3300035528_000047-3300035528-Ga0376490_000042_58991_59482

Identity

Kingdom:
archaea

Quality

70.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-65
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.71 49.0 4.48e-01 72.2% 90.3%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.69 47.0 4.34e-01 70.4% 89.7%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 46.0 3.66e-01 75.9% 48.7%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 44.0 4.43e-01 74.1% 87.5%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 44.0 3.68e-01 74.1% 50.5%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.62 42.0 3.94e-01 70.4% 89.6%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 41.0 3.46e-01 72.2% 48.4%
3ju4A01 3.30.750.60 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Endosialidase, N-terminal extension domain 0.60 42.0 3.87e-01 75.9% 95.8%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.21e-01 79.6% 54.3%
2q6iA02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.54 37.0 3.01e-01 74.1% 35.0%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.54 36.0 2.61e-01 72.2% 29.9%
2gw6A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 38.0 3.14e-01 83.3% 90.5%
3ljsA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 43.0 2.81e-01 100.0% 40.9%
2kksA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 39.0 3.01e-01 87.0% 60.3%
1r0vA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 37.0 3.40e-01 79.6% 72.7%
1u0kA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 39.0 3.03e-01 96.3% 92.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968161 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.71 49.0 4.55e-01 74.1% 92.9%
3289974 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.68 47.0 4.40e-01 74.1% 94.3%
3938726 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 45.0 3.70e-01 74.1% 45.7%
3743760 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.60 44.0 3.57e-01 81.5% 55.5%
3956284 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.59 43.0 3.31e-01 83.3% 49.0%
3605661 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.59 40.0 2.44e-01 72.2% 38.7%
3220699 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 41.0 3.10e-01 75.9% 49.3%
3781617 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.57 40.0 3.33e-01 74.1% 60.0%
3601501 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.54 43.0 2.34e-01 92.6% 25.4%
3709439 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.54 37.0 3.39e-01 75.9% 80.0%
3717848 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.53 42.0 2.40e-01 92.6% 40.1%
4963041 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.53 41.0 3.07e-01 94.4% 72.9%
4626615 4002.1.1.4 ↗ alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › DHQS_C 0.52 35.0 2.54e-01 72.2% 63.0%
3422262 3497.1.1.1 ↗ beta barrels › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › DNMT1-RFD 0.51 35.0 2.87e-01 74.1% 58.3%
3441311 70.3.1.0 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like 0.51 34.0 2.62e-01 70.4% 51.5%
3643317 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.50 38.0 3.41e-01 94.4% 57.5%
3699975 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.50 40.0 2.33e-01 90.7% 16.7%
3516902 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.50 34.0 3.35e-01 72.2% 76.7%