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IMGVR_UViG_3300035531_000244-3300035531-Ga0376493_010374_1461_1910
Arc-VirIMGVR_UViG_3300035531_000244-3300035531-Ga0376493_010374_1461_1910
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-57
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.81 | 64.0 | 4.90e-01 | 88.0% | 45.7% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.73 | 56.0 | 4.20e-01 | 88.0% | 59.7% |
| 7kz9A02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.68 | 58.0 | 3.92e-01 | 100.0% | 73.6% |
| 2vqxA01 | 3.10.170.10 | Alpha Beta › Roll › Elastase; domain 1 › | 0.67 | 56.0 | 3.94e-01 | 92.0% | 83.9% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 53.0 | 4.74e-01 | 98.0% | 89.9% |
| 2xz2A00 | 1.20.960.50 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Cleavage stimulation factor subunit 1, dimerisation domain | 0.65 | 49.0 | 4.52e-01 | 82.0% | 71.2% |
| 1nu7D02 | 1.20.120.760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2 | 0.65 | 55.0 | 4.19e-01 | 100.0% | 78.1% |
| 1szhA02 | 1.10.150.370 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain | 0.64 | 53.0 | 4.66e-01 | 100.0% | 97.6% |
| 1xfiA02 | 1.20.1700.10 | Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like | 0.61 | 47.0 | 4.02e-01 | 90.0% | 75.6% |
| 3l0mA02 | 1.20.1280.280 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.60 | 40.0 | 3.55e-01 | 70.0% | 76.9% |
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.60 | 47.0 | 3.44e-01 | 90.0% | 62.7% |
| 3tw8A03 | 6.10.140.1000 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 35.0 | 3.79e-01 | 70.0% | 73.2% |
| 5c4yA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 42.0 | 3.26e-01 | 88.0% | 89.0% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 37.0 | 3.36e-01 | 72.0% | 69.9% |
| 3iq1B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 40.0 | 3.06e-01 | 94.0% | 81.8% |
| 6mcjA00 | 1.10.2090.10 | Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain | 0.53 | 44.0 | 3.25e-01 | 96.0% | 77.9% |
| 2kinB01 | 1.20.58.980 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 36.0 | 3.16e-01 | 70.0% | 45.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4975369 | 4.10.1.0 ↗ | beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain | 0.76 | 65.0 | 5.20e-01 | 100.0% | 65.7% |
| 4547686 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.76 | 65.0 | 5.89e-01 | 100.0% | 72.9% |
| 3176652 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.66 | 54.0 | 4.68e-01 | 94.0% | 70.0% |
| 4026914 | 3444.2.1.1 ↗ | alpha arrays › DP domain › XPC-binding domain and DDI helical domain › XPC-binding domain › XPC-binding | 0.62 | 45.0 | 4.43e-01 | 82.0% | 80.0% |
| 5044067 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.61 | 51.0 | 4.33e-01 | 100.0% | 73.3% |
| 5068621 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.60 | 45.0 | 4.02e-01 | 82.0% | 73.3% |
| 5054477 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.60 | 48.0 | 4.82e-01 | 98.0% | 92.0% |
| 4957472 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.58 | 47.0 | 2.92e-01 | 96.0% | 25.5% |
| 3581329 | 5067.1.1.5 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing | 0.57 | 49.0 | 3.06e-01 | 100.0% | 67.1% |
| 3799718 | 11.2.1.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 | 0.57 | 44.0 | 2.99e-01 | 100.0% | 67.2% |
| 3682724 | 109.4.1.1475 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27629 | 0.53 | 37.0 | 2.49e-01 | 74.0% | 24.3% |
| 4002308 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 37.0 | 2.65e-01 | 84.0% | 66.0% |
| 3664088 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.51 | 39.0 | 3.68e-01 | 90.0% | 73.8% |
D2
high
residues 60-148
Domain cluster:
rep: NC_030951.1__YP_009277357.1__phiCTC2B_16__00016__D49-134