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IMGVR_UViG_3300035531_000279-3300035531-Ga0376493_006553_5839_5982
Arc-VirIMGVR_UViG_3300035531_000279-3300035531-Ga0376493_006553_5839_5982
Identity
- Kingdom:
- archaea
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-46
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oycB00 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.80 | 67.0 | 5.38e-01 | 97.7% | 56.2% |
| 2xssA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.79 | 59.0 | 3.97e-01 | 79.5% | 23.1% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 58.0 | 4.30e-01 | 81.8% | 85.3% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 60.0 | 4.45e-01 | 84.1% | 60.4% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.75 | 56.0 | 3.49e-01 | 79.5% | 20.9% |
| 1i1rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.74 | 66.0 | 4.39e-01 | 100.0% | 86.8% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.74 | 63.0 | 4.41e-01 | 100.0% | 55.3% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.73 | 65.0 | 4.72e-01 | 100.0% | 39.5% |
| 3kewB02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.73 | 63.0 | 4.39e-01 | 97.7% | 94.4% |
| 2cxcA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.73 | 51.0 | 4.43e-01 | 75.0% | 50.7% |
| 3ep6B01 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.71 | 47.0 | 4.82e-01 | 70.5% | 73.2% |
| 6l2cB00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.69 | 61.0 | 3.51e-01 | 97.7% | 49.9% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 54.0 | 4.22e-01 | 86.4% | 93.6% |
| 5tvoB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.68 | 47.0 | 4.28e-01 | 75.0% | 52.5% |
| 2bjnB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.67 | 59.0 | 4.11e-01 | 100.0% | 82.4% |
| 7yh2B01 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.67 | 55.0 | 3.83e-01 | 93.2% | 88.0% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.64 | 45.0 | 3.62e-01 | 81.8% | 37.9% |
| 5jpnC01 | 2.60.40.690 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain | 0.60 | 38.0 | 2.73e-01 | 77.3% | 21.8% |
| 7dklA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 50.0 | 3.92e-01 | 93.2% | 55.6% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.59 | 42.0 | 3.32e-01 | 75.0% | 96.6% |
| 1uv7A00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.58 | 40.0 | 3.39e-01 | 77.3% | 40.8% |
| 2j0wA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 41.0 | 3.53e-01 | 79.5% | 45.3% |
| 3tviA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.57 | 42.0 | 2.95e-01 | 86.4% | 22.6% |
| 4i98C01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 50.0 | 4.19e-01 | 100.0% | 62.7% |
| 1i94H01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.56 | 43.0 | 3.59e-01 | 84.1% | 74.4% |
| 4iscA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 43.0 | 2.97e-01 | 86.4% | 39.7% |
| 1nm3A02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 40.0 | 3.50e-01 | 81.8% | 68.6% |
| 1vx4407 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 3.23e-01 | 77.3% | 79.7% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3392569 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.85 | 61.0 | 4.25e-01 | 75.0% | 31.2% |
| 3265214 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.81 | 60.0 | 4.37e-01 | 79.5% | 84.3% |
| 4979423 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.80 | 73.0 | 5.04e-01 | 100.0% | 34.1% |
| 3996360 | 109.2.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase | 0.80 | 61.0 | 3.56e-01 | 95.5% | 11.0% |
| 4988114 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.78 | 62.0 | 3.83e-01 | 86.4% | 20.0% |
| 3793430 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.78 | 65.0 | 4.96e-01 | 90.9% | 72.6% |
| 5078448 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.78 | 61.0 | 4.44e-01 | 84.1% | 83.6% |
| 3410445 | 627.1.1.4 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › PF26202 | 0.77 | 63.0 | 4.34e-01 | 88.6% | 41.4% |
| 4662222 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.76 | 59.0 | 4.23e-01 | 84.1% | 54.2% |
| 3202986 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.76 | 59.0 | 4.19e-01 | 84.1% | 51.2% |
| 3927377 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.75 | 59.0 | 3.73e-01 | 84.1% | 21.5% |
| 3341083 | 109.4.1.728 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 60.0 | 3.55e-01 | 88.6% | 13.5% |
| 3349197 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.74 | 52.0 | 3.20e-01 | 72.7% | 19.6% |
| 5054316 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.74 | 51.0 | 4.30e-01 | 72.7% | 42.7% |
| 3431805 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.74 | 65.0 | 4.31e-01 | 100.0% | 52.8% |
| 3640334 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.74 | 66.0 | 4.76e-01 | 100.0% | 90.0% |
| 4945303 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.74 | 59.0 | 3.46e-01 | 88.6% | 13.7% |
| 3811338 | 109.4.1.2260 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_19 | 0.74 | 61.0 | 3.65e-01 | 90.9% | 15.2% |
| 5076763 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.73 | 61.0 | 5.14e-01 | 95.5% | 54.7% |
| 5014685 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.73 | 56.0 | 4.93e-01 | 84.1% | 61.5% |
| 5031689 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.72 | 61.0 | 5.07e-01 | 95.5% | 54.7% |
| 3230011 | 6106.1.1.0 ↗ | extended segments › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY | 0.72 | 63.0 | 5.00e-01 | 95.5% | 91.8% |
| 5046875 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.72 | 61.0 | 4.11e-01 | 93.2% | 80.6% |
| 3989790 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.71 | 51.0 | 4.97e-01 | 79.5% | 70.0% |
| 5072747 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.71 | 54.0 | 4.86e-01 | 84.1% | 60.0% |
| 3613991 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.70 | 58.0 | 3.81e-01 | 93.2% | 56.2% |
| 3482243 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.69 | 62.0 | 5.76e-01 | 100.0% | 80.0% |
| 3761098 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.68 | 58.0 | 3.92e-01 | 100.0% | 90.3% |
| 3710411 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.68 | 45.0 | 4.21e-01 | 70.5% | 51.7% |
| 3438502 | 292.1.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) | 0.68 | 58.0 | 3.60e-01 | 95.5% | 64.6% |
| 5061627 | 5073.1.2.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain | 0.67 | 60.0 | 3.76e-01 | 100.0% | 47.4% |
| 4236584 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.67 | 47.0 | 4.60e-01 | 77.3% | 68.0% |
| 3198423 | 5000.6.1.0 ↗ | alpha arrays › Toxins' membrane translocation domains › Tethering factor for nuclear proteasome cut8 › Tethering factor for nuclear proteasome cut8 | 0.67 | 59.0 | 3.78e-01 | 100.0% | 35.7% |
| 3285520 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.65 | 50.0 | 3.39e-01 | 86.4% | 70.3% |
| 3229759 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 45.0 | 4.12e-01 | 77.3% | 64.6% |
| 3386878 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.64 | 54.0 | 3.70e-01 | 93.2% | 76.7% |
| 3058521 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.64 | 52.0 | 3.64e-01 | 93.2% | 83.4% |
| 3724934 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.62 | 53.0 | 3.50e-01 | 97.7% | 37.4% |
| 5041165 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.61 | 52.0 | 3.46e-01 | 95.5% | 66.9% |
| 3205506 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.61 | 54.0 | 3.40e-01 | 97.7% | 32.3% |
| 5038509 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.61 | 53.0 | 3.62e-01 | 97.7% | 79.4% |
| 3280205 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.61 | 43.0 | 3.47e-01 | 77.3% | 38.9% |
| 5059636 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.61 | 51.0 | 3.39e-01 | 95.5% | 37.2% |
| 1157899 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.61 | 53.0 | 3.62e-01 | 97.7% | 44.5% |
| 3739730 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.61 | 52.0 | 3.42e-01 | 95.5% | 52.0% |
| 3166357 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.60 | 53.0 | 3.47e-01 | 97.7% | 32.8% |
| 4204745 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.60 | 50.0 | 3.36e-01 | 95.5% | 37.2% |
| 5008330 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.60 | 51.0 | 3.52e-01 | 97.7% | 44.5% |
| 4998157 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.59 | 51.0 | 3.44e-01 | 97.7% | 53.1% |
| 5043712 | 2004.1.1.194 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 | 0.58 | 50.0 | 3.17e-01 | 97.7% | 90.6% |