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IMGVR_UViG_3300035542_000080-3300035542-Ga0376504_002506_6374_6664
Arc-VirIMGVR_UViG_3300035542_000080-3300035542-Ga0376504_002506_6374_6664
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-50
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.70 | 38.0 | 3.43e-01 | 89.6% | 38.2% |
| 2ii2A02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.65 | 46.0 | 4.39e-01 | 77.1% | 91.4% |
| 2ahoB02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.64 | 54.0 | 4.50e-01 | 100.0% | 80.2% |
| 1n00A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.60 | 44.0 | 3.85e-01 | 79.2% | 75.3% |
| 4bfmA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.59 | 48.0 | 2.98e-01 | 97.9% | 14.4% |
| 2l22A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.59 | 48.0 | 4.06e-01 | 100.0% | 82.4% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.59 | 38.0 | 3.27e-01 | 95.8% | 38.6% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 42.0 | 4.00e-01 | 91.7% | 83.6% |
| 2ah5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 46.0 | 4.24e-01 | 93.8% | 87.7% |
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 46.0 | 3.43e-01 | 95.8% | 49.2% |
| 3c48B02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 46.0 | 3.19e-01 | 100.0% | 42.6% |
| 1wh5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 40.0 | 3.49e-01 | 89.6% | 48.8% |
| 3kzxA02 | 1.10.150.730 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 44.0 | 4.10e-01 | 95.8% | 80.6% |
| 1fafA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.53 | 38.0 | 3.42e-01 | 85.4% | 65.8% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 39.0 | 3.49e-01 | 87.5% | 67.9% |
| 4bjqA00 | 1.10.150.770 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 33.0 | 3.02e-01 | 70.8% | 39.7% |
| 1z1vA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.52 | 41.0 | 3.77e-01 | 97.9% | 97.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3193876 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.70 | 49.0 | 4.53e-01 | 85.4% | 58.3% |
| 3695412 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.68 | 51.0 | 3.05e-01 | 100.0% | 11.3% |
| 3383371 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.65 | 45.0 | 2.71e-01 | 70.8% | 16.2% |
| 1693527 | 3009.2.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › STAC domain › STAC domain | 0.64 | 44.0 | 3.95e-01 | 89.6% | 51.5% |
| 4512951 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.62 | 46.0 | 4.43e-01 | 97.9% | 68.3% |
| 3696193 | 7558.1.1.1 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase | 0.61 | 45.0 | 2.81e-01 | 95.8% | 13.2% |
| 3475816 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.56 | 41.0 | 3.95e-01 | 79.2% | 76.4% |
| 3606798 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 38.0 | 3.73e-01 | 72.9% | 69.1% |
| 3313260 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.54 | 36.0 | 3.32e-01 | 72.9% | 55.7% |
| 5018159 | 101.29.1.1 ↗ | alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like › DUF790 | 0.53 | 39.0 | 3.88e-01 | 87.5% | 92.0% |
| 3606717 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 37.0 | 3.69e-01 | 75.0% | 84.0% |
| 4438754 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.53 | 38.0 | 3.74e-01 | 79.2% | 76.4% |
| 3222238 | 101.1.2.649 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28730 | 0.52 | 39.0 | 3.58e-01 | 85.4% | 68.6% |
D2
medium
residues 52-94
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jheA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.69 | 60.0 | 4.44e-01 | 100.0% | 38.9% |
| 4b9wA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 44.0 | 4.14e-01 | 72.1% | 60.7% |
| 2ztgA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.62 | 51.0 | 3.20e-01 | 97.7% | 53.5% |
| 4hh2B03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 47.0 | 3.58e-01 | 83.7% | 45.0% |
| 2p04A00 | 3.30.450.260 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain | 0.60 | 43.0 | 3.25e-01 | 79.1% | 34.6% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 51.0 | 3.75e-01 | 100.0% | 37.9% |
| 3lifA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 41.0 | 3.32e-01 | 76.7% | 37.8% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 50.0 | 3.82e-01 | 100.0% | 41.5% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 39.0 | 3.95e-01 | 86.0% | 69.0% |
| 1yuaA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 42.0 | 3.91e-01 | 90.7% | 60.3% |
| 3gvzA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.57 | 46.0 | 2.93e-01 | 97.7% | 73.8% |
| 2vszB02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 44.0 | 3.43e-01 | 95.3% | 65.8% |
| 3be3A00 | 2.30.30.320 | Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain | 0.57 | 48.0 | 4.07e-01 | 100.0% | 60.5% |
| 3q0xA01 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.56 | 47.0 | 3.28e-01 | 100.0% | 30.3% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 42.0 | 3.02e-01 | 86.0% | 29.5% |
| 1uwvA03 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 43.0 | 3.22e-01 | 100.0% | 68.6% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 37.0 | 2.63e-01 | 74.4% | 48.4% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.52 | 39.0 | 3.49e-01 | 100.0% | 62.5% |
| 4zn4A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 39.0 | 2.31e-01 | 95.3% | 9.0% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 40.0 | 2.38e-01 | 100.0% | 45.6% |
| 2qmlA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 39.0 | 2.75e-01 | 100.0% | 82.9% |
| 4wfsA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 44.0 | 2.82e-01 | 100.0% | 80.6% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 34.0 | 3.15e-01 | 76.7% | 50.9% |
| 3dohA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 38.0 | 2.45e-01 | 83.7% | 33.3% |
| 1oygA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 40.0 | 2.38e-01 | 100.0% | 45.4% |
| 4qiwB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.51 | 40.0 | 2.87e-01 | 100.0% | 41.7% |
| 2ktsA01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 36.0 | 2.83e-01 | 88.4% | 32.4% |
| 1xubA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 42.0 | 3.00e-01 | 100.0% | 85.8% |
| 3e9eB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 36.0 | 2.34e-01 | 81.4% | 97.5% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3505640 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.69 | 44.0 | 3.99e-01 | 83.7% | 46.7% |
| 5027788 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 48.0 | 3.94e-01 | 86.0% | 79.6% |
| 3927894 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.62 | 52.0 | 3.68e-01 | 100.0% | 31.1% |
| 5018913 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.60 | 46.0 | 3.29e-01 | 83.7% | 30.0% |
| 5003966 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 47.0 | 4.16e-01 | 93.0% | 58.5% |
| 3432379 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.59 | 48.0 | 4.25e-01 | 93.0% | 69.2% |
| 4402197 | 11.1.1.236 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig | 0.59 | 43.0 | 3.31e-01 | 79.1% | 61.1% |
| 4087511 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.59 | 42.0 | 3.20e-01 | 79.1% | 72.7% |
| 5008386 | 1001.1.1.1 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 | 0.58 | 48.0 | 3.79e-01 | 97.7% | 53.7% |
| 4185103 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.57 | 43.0 | 3.91e-01 | 88.4% | 60.0% |
| 3623534 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 47.0 | 3.73e-01 | 93.0% | 61.1% |
| 3612106 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 45.0 | 3.79e-01 | 90.7% | 50.7% |
| None | — | 0.56 | 41.0 | 2.48e-01 | 79.1% | 59.0% | |
| 3442609 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.55 | 45.0 | 4.07e-01 | 93.0% | 75.0% |
| 3377093 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.54 | 43.0 | 3.25e-01 | 100.0% | 41.6% |
| 3300233 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.54 | 43.0 | 3.51e-01 | 93.0% | 85.9% |
| 3718300 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 38.0 | 3.27e-01 | 83.7% | 45.3% |
| 4075142 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 38.0 | 2.74e-01 | 79.1% | 25.2% |
| 4237534 | 330.7.1.1 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › DUF905 | 0.53 | 42.0 | 3.75e-01 | 90.7% | 61.7% |
| 3357663 | 383.1.1.0 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Defensin-related | 0.53 | 34.0 | 3.80e-01 | 72.1% | 93.3% |
| 4298544 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 40.0 | 2.94e-01 | 86.0% | 72.8% |
| 3882227 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 43.0 | 2.92e-01 | 95.3% | 76.0% |
| 3838288 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 39.0 | 2.97e-01 | 86.0% | 71.3% |
| 4175039 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.52 | 39.0 | 3.63e-01 | 88.4% | 65.5% |
| 3728986 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.51 | 42.0 | 2.87e-01 | 100.0% | 65.0% |
| 4026679 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.51 | 39.0 | 2.52e-01 | 90.7% | 16.3% |
| 4164250 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.51 | 40.0 | 3.53e-01 | 88.4% | 61.5% |
| 4886249 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.51 | 39.0 | 3.53e-01 | 88.4% | 76.9% |
| 3619345 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.50 | 40.0 | 2.77e-01 | 100.0% | 36.2% |
| 4944756 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.50 | 39.0 | 3.53e-01 | 88.4% | 70.0% |
| 4028487 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 39.0 | 2.19e-01 | 93.0% | 6.0% |
| 3940407 | 372.2.1.1 ↗ | a+b complex topology › RNase A-like › EndoU-like › EndoU-like › XendoU | 0.50 | 35.0 | 2.23e-01 | 83.7% | 53.5% |