←Back to structures

IMGVR_UViG_3300035556_000082-3300035556-Ga0394028_14341_21172_21291

Arc-Vir

IMGVR_UViG_3300035556_000082-3300035556-Ga0394028_14341_21172_21291

Identity

Kingdom:
archaea

Quality

85.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-38
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.78 66.0 5.25e-01 100.0% 47.1%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.76 64.0 4.90e-01 100.0% 40.5%
5hc8A00 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.76 67.0 3.97e-01 100.0% 15.3%
2or0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.75 62.0 3.88e-01 100.0% 18.3%
1yowA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.74 60.0 3.56e-01 90.6% 12.6%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.74 58.0 3.35e-01 90.6% 9.3%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.74 63.0 4.85e-01 100.0% 76.7%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.73 62.0 5.02e-01 100.0% 50.0%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 58.0 3.35e-01 84.4% 12.7%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.71 57.0 3.48e-01 96.9% 23.6%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.71 59.0 3.64e-01 100.0% 15.4%
2p6nA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 54.0 3.44e-01 87.5% 30.6%
1id1A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 55.0 3.68e-01 100.0% 45.8%
2bl7A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.68 52.0 4.22e-01 100.0% 46.8%
3u9rB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.67 54.0 3.28e-01 100.0% 15.2%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 52.0 4.05e-01 96.9% 86.7%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 3.90e-01 96.9% 36.6%
2lzfA00 1.10.287.3030 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 47.0 3.88e-01 100.0% 57.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3192196 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 68.0 4.04e-01 100.0% 12.8%
3373946 192.19.1.0 ↗ alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like 0.79 69.0 6.69e-01 96.9% 94.3%
3854050 604.12.1.43 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Tim17 0.79 64.0 4.28e-01 100.0% 26.7%
5012848 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.77 62.0 3.99e-01 100.0% 18.8%
3170408 601.1.1.108 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › TYA 0.77 62.0 4.62e-01 100.0% 61.1%
3173074 606.1.1.7 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › TYA 0.76 62.0 4.62e-01 100.0% 61.1%
3688288 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 64.0 4.08e-01 100.0% 19.4%
3512341 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 57.0 4.78e-01 100.0% 47.1%
3267097 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 64.0 4.21e-01 100.0% 24.3%
3625998 108.1.1.21 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › SPARC_Ca_bdg 0.73 63.0 4.21e-01 100.0% 83.8%
3544646 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.73 54.0 4.59e-01 100.0% 47.1%
3941457 1203.1.2.3 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › YiaAB 0.73 59.0 4.08e-01 100.0% 25.8%
3509156 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.72 55.0 4.62e-01 100.0% 47.1%
3435075 1.1.9.4 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA 0.72 64.0 3.83e-01 100.0% 16.3%
3873692 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.72 56.0 4.96e-01 96.9% 56.4%
4948627 228.1.1.1 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.71 61.0 3.83e-01 100.0% 18.0%
3533067 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.71 57.0 4.63e-01 100.0% 72.9%
3518933 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.71 58.0 4.74e-01 96.9% 47.7%
3929142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 4.70e-01 96.9% 63.3%
4359331 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.67 51.0 4.46e-01 100.0% 93.3%
3686904 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.65 56.0 3.47e-01 100.0% 16.9%