←Back to structures
IMGVR_UViG_3300035556_000082-3300035556-Ga0394028_14341_3347_3526
Arc-VirIMGVR_UViG_3300035556_000082-3300035556-Ga0394028_14341_3347_3526
Identity
- Kingdom:
- archaea
Quality
86.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-57
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jqgA02 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.70 | 56.0 | 3.47e-01 | 86.8% | 21.4% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 50.0 | 3.92e-01 | 77.4% | 37.0% |
| 2xssA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.69 | 52.0 | 3.75e-01 | 83.0% | 30.1% |
| 4gniA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.66 | 49.0 | 4.21e-01 | 81.1% | 73.3% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 49.0 | 4.12e-01 | 83.0% | 50.5% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 47.0 | 3.97e-01 | 83.0% | 73.4% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 52.0 | 3.48e-01 | 96.2% | 26.8% |
| 6rzqA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.62 | 46.0 | 3.99e-01 | 81.1% | 72.9% |
| 4jneA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.62 | 47.0 | 3.99e-01 | 83.0% | 53.4% |
| 3hnoA01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 46.0 | 3.16e-01 | 84.9% | 20.8% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 43.0 | 3.24e-01 | 75.5% | 83.9% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.61 | 44.0 | 3.03e-01 | 77.4% | 99.4% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.60 | 45.0 | 3.32e-01 | 84.9% | 30.7% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 45.0 | 3.77e-01 | 86.8% | 44.1% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.60 | 48.0 | 3.98e-01 | 88.7% | 52.6% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.59 | 52.0 | 4.00e-01 | 100.0% | 44.5% |
| 1y60A00 | 3.30.230.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Formaldehyde-activating enzyme | 0.58 | 47.0 | 3.41e-01 | 94.3% | 43.5% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.58 | 39.0 | 3.52e-01 | 75.5% | 46.3% |
| 2aeuA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 45.0 | 3.03e-01 | 86.8% | 92.6% |
| 2k31A00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.58 | 40.0 | 2.98e-01 | 75.5% | 82.6% |
| 1ez0A02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.57 | 42.0 | 2.92e-01 | 79.2% | 34.1% |
| 1hh2P01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.57 | 45.0 | 3.48e-01 | 88.7% | 45.6% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 46.0 | 3.96e-01 | 92.5% | 61.4% |
| 1kfiA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.54 | 42.0 | 3.30e-01 | 88.7% | 63.2% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.53 | 37.0 | 3.09e-01 | 73.6% | 69.6% |
| 1ci0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 41.0 | 2.82e-01 | 88.7% | 40.7% |
| 3vpbA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 37.0 | 3.39e-01 | 73.6% | 69.6% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 37.0 | 2.70e-01 | 77.4% | 55.0% |
| 3djlA02 | 6.10.250.600 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 34.0 | 3.41e-01 | 81.1% | 66.7% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.42e-01 | 88.7% | 95.7% |
| 3kuvB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 43.0 | 3.29e-01 | 98.1% | 69.9% |
| 3ijfX00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 38.0 | 3.04e-01 | 84.9% | 49.6% |
| 2dryA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 37.0 | 2.91e-01 | 81.1% | 66.2% |
| 1uyvA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 39.0 | 2.53e-01 | 84.9% | 29.4% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5037750 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.78 | 55.0 | 3.71e-01 | 75.5% | 83.1% |
| 5036205 | 2004.1.1.348 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B | 0.78 | 53.0 | 2.93e-01 | 100.0% | 5.0% |
| 3649913 | 5050.1.1.58 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C | 0.77 | 55.0 | 3.78e-01 | 75.5% | 26.5% |
| 4933528 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.76 | 53.0 | 3.52e-01 | 73.6% | 76.2% |
| 5025514 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.75 | 66.0 | 5.21e-01 | 100.0% | 50.0% |
| 3443252 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.74 | 51.0 | 5.45e-01 | 71.7% | 84.4% |
| 3578921 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.73 | 52.0 | 3.08e-01 | 75.5% | 25.6% |
| 4029177 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 55.0 | 4.09e-01 | 86.8% | 37.7% |
| 3998693 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.70 | 54.0 | 3.22e-01 | 86.8% | 50.1% |
| 3991750 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.69 | 53.0 | 3.29e-01 | 84.9% | 27.9% |
| 3837975 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 54.0 | 3.80e-01 | 86.8% | 28.5% |
| 3332406 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.69 | 52.0 | 4.24e-01 | 84.9% | 46.7% |
| 3060306 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.68 | 57.0 | 4.49e-01 | 92.5% | 51.9% |
| 4647008 | 312.1.1.11 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › Ap4A_phos_N | 0.67 | 53.0 | 3.70e-01 | 86.8% | 30.6% |
| 3998873 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.67 | 54.0 | 3.45e-01 | 86.8% | 20.4% |
| 4981316 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.66 | 52.0 | 3.55e-01 | 88.7% | 71.0% |
| 4984373 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.65 | 52.0 | 3.51e-01 | 88.7% | 67.8% |
| 3592672 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.65 | 55.0 | 3.81e-01 | 94.3% | 74.7% |
| 4955493 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.65 | 57.0 | 3.67e-01 | 100.0% | 42.0% |
| 3604410 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.65 | 54.0 | 3.72e-01 | 94.3% | 27.2% |
| 3629519 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.65 | 50.0 | 3.18e-01 | 84.9% | 32.9% |
| 3515339 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.64 | 49.0 | 2.95e-01 | 86.8% | 51.8% |
| 4945274 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 51.0 | 3.95e-01 | 90.6% | 80.8% |
| 3389370 | 2011.1.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 | 0.64 | 50.0 | 3.13e-01 | 86.8% | 21.0% |
| 3747930 | 6006.1.1.4 ↗ | extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF28678 | 0.64 | 54.0 | 4.80e-01 | 100.0% | 91.3% |
| 3360121 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.63 | 47.0 | 3.92e-01 | 83.0% | 94.0% |
| 3586334 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.63 | 44.0 | 3.77e-01 | 75.5% | 48.9% |
| 4953135 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.63 | 49.0 | 3.67e-01 | 88.7% | 64.8% |
| 3599395 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 48.0 | 2.89e-01 | 88.7% | 11.2% |
| 5048993 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.62 | 45.0 | 3.46e-01 | 79.2% | 60.8% |
| 5011884 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.62 | 52.0 | 3.38e-01 | 98.1% | 40.4% |
| 4353266 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.61 | 45.0 | 4.18e-01 | 84.9% | 67.6% |
| 3791935 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.61 | 48.0 | 3.78e-01 | 86.8% | 50.0% |
| 3648590 | 101.1.2.497 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25874 | 0.60 | 45.0 | 3.95e-01 | 81.1% | 92.5% |
| 5074781 | 241.9.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 | 0.59 | 43.0 | 3.34e-01 | 79.2% | 33.9% |
| 2834311 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.59 | 44.0 | 4.30e-01 | 79.2% | 74.1% |
| 2101213 | 304.51.1.5 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 | 0.59 | 36.0 | 3.65e-01 | 92.5% | 59.3% |
| 3392740 | 2011.1.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 | 0.59 | 45.0 | 2.87e-01 | 84.9% | 75.2% |
| 3911142 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.58 | 46.0 | 3.82e-01 | 86.8% | 50.5% |
| 3681475 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.57 | 51.0 | 3.12e-01 | 100.0% | 64.9% |
| 7609 | 885.1.1.1 ↗ | a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N | 0.57 | 45.0 | 3.47e-01 | 88.7% | 45.2% |
| 3823835 | 304.4.1.78 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7036 | 0.57 | 39.0 | 3.12e-01 | 71.7% | 37.1% |
| 2101211 | 304.51.1.5 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 | 0.56 | 35.0 | 2.94e-01 | 92.5% | 35.5% |
| 4996628 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 51.0 | 3.33e-01 | 100.0% | 65.1% |
| 4873577 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.56 | 43.0 | 3.06e-01 | 84.9% | 32.7% |
| 2810200 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.55 | 42.0 | 3.92e-01 | 83.0% | 92.5% |
| 1641233 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.55 | 43.0 | 3.04e-01 | 84.9% | 41.0% |
| None | — | 0.55 | 42.0 | 2.80e-01 | 88.7% | 52.4% | |
| 3986130 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.54 | 42.0 | 2.60e-01 | 84.9% | 31.9% |
| 3921321 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 45.0 | 2.85e-01 | 98.1% | 42.2% |
| 3598294 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.53 | 41.0 | 3.19e-01 | 86.8% | 43.2% |
| 4899007 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.52 | 41.0 | 3.84e-01 | 92.5% | 69.4% |
| 3986356 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.52 | 41.0 | 2.74e-01 | 98.1% | 35.7% |
| 3531794 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.52 | 45.0 | 3.15e-01 | 100.0% | 55.7% |
| 5022074 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.51 | 41.0 | 2.78e-01 | 86.8% | 80.5% |
| 3483611 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 36.0 | 3.20e-01 | 83.0% | 95.6% |