←Back to structures
IMGVR_UViG_3300035561_000235-3300035561-Ga0394202_001299_6460_7161
Arc-VirIMGVR_UViG_3300035561_000235-3300035561-Ga0394202_001299_6460_7161
Identity
- Kingdom:
- archaea
Quality
42.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-62
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d0dA00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.68 | 50.0 | 4.75e-01 | 92.2% | 68.3% |
| 2dqlA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 44.0 | 3.40e-01 | 72.5% | 60.9% |
| 2hx0A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.60 | 41.0 | 3.05e-01 | 70.6% | 43.9% |
| 2y3aA01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 41.0 | 2.64e-01 | 74.5% | 28.9% |
| 3pz8C00 | 2.40.240.130 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › | 0.59 | 39.0 | 3.45e-01 | 70.6% | 92.6% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 40.0 | 2.90e-01 | 72.5% | 36.7% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.58 | 44.0 | 4.33e-01 | 94.1% | 81.8% |
| 2iabA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 40.0 | 2.95e-01 | 74.5% | 37.1% |
| 4bfrB02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 41.0 | 3.14e-01 | 76.5% | 62.5% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 42.0 | 3.71e-01 | 84.3% | 94.0% |
| 2wxfA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 40.0 | 3.18e-01 | 78.4% | 69.7% |
| 1vhvA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.55 | 42.0 | 3.26e-01 | 90.2% | 90.6% |
| 6mv2A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 38.0 | 3.10e-01 | 72.5% | 80.0% |
| 3i4tA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.54 | 41.0 | 3.18e-01 | 92.2% | 91.8% |
| 1va0B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.54 | 39.0 | 3.12e-01 | 82.4% | 92.7% |
| 2zvbA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.53 | 36.0 | 2.81e-01 | 74.5% | 28.9% |
| 1ve2B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.53 | 39.0 | 3.22e-01 | 86.3% | 97.4% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.53 | 37.0 | 3.47e-01 | 74.5% | 68.2% |
| 1ssfA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 36.0 | 3.57e-01 | 72.5% | 89.1% |
| 1aihA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.53 | 39.0 | 2.77e-01 | 82.4% | 32.9% |
| 4issA03 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.52 | 39.0 | 2.95e-01 | 82.4% | 81.8% |
| 2l66A00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.52 | 32.0 | 3.26e-01 | 78.4% | 56.6% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.51 | 36.0 | 2.76e-01 | 78.4% | 55.2% |
| 5j9bA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 37.0 | 2.73e-01 | 84.3% | 62.0% |
| 1auvA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.51 | 35.0 | 3.36e-01 | 74.5% | 70.0% |
| 2c7hA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 42.0 | 3.61e-01 | 98.0% | 83.7% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3307915 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.87 | 65.0 | 5.91e-01 | 82.4% | 61.5% |
| 3237892 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.83 | 68.0 | 6.45e-01 | 88.2% | 75.0% |
| 3784386 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.81 | 60.0 | 6.34e-01 | 82.4% | 91.1% |
| 5053880 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.81 | 65.0 | 6.79e-01 | 100.0% | 100.0% |
| 5034882 | 4203.1.1.0 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like | 0.80 | 62.0 | 6.50e-01 | 86.3% | 97.8% |
| 5049527 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.76 | 54.0 | 5.14e-01 | 76.5% | 68.3% |
| 4997007 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.75 | 60.0 | 5.41e-01 | 94.1% | 64.3% |
| 3466575 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.74 | 58.0 | 5.36e-01 | 86.3% | 67.7% |
| 5051696 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.72 | 52.0 | 5.17e-01 | 78.4% | 76.4% |
| 4120496 | 377.1.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e | 0.71 | 63.0 | 5.56e-01 | 100.0% | 77.3% |
| 5066586 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.69 | 54.0 | 5.49e-01 | 86.3% | 92.0% |
| 4009252 | 3371.1.1.2 ↗ | few secondary structure elements › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › PF27493 | 0.69 | 54.0 | 5.48e-01 | 90.2% | 90.0% |
| 4306719 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 57.0 | 5.38e-01 | 100.0% | 92.3% |
| 3167819 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 51.0 | 4.22e-01 | 82.4% | 90.0% |
| 4305473 | 384.1.1.0 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like | 0.67 | 47.0 | 4.67e-01 | 94.1% | 70.9% |
| 5049822 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 52.0 | 5.45e-01 | 86.3% | 100.0% |
| 3308238 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.66 | 48.0 | 5.29e-01 | 82.4% | 100.0% |
| 3977489 | 377.1.1.117 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF27493 | 0.65 | 51.0 | 5.21e-01 | 90.2% | 92.0% |
| 3700503 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 45.0 | 3.01e-01 | 74.5% | 20.5% |
| 4946657 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.64 | 54.0 | 4.99e-01 | 94.1% | 100.0% |
| 3463187 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.63 | 39.0 | 2.43e-01 | 78.4% | 10.2% |
| 5063941 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.63 | 47.0 | 3.13e-01 | 86.3% | 64.3% |
| 3492427 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.62 | 50.0 | 4.55e-01 | 96.1% | 70.7% |
| 3452971 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.62 | 45.0 | 3.57e-01 | 82.4% | 35.7% |
| 3795776 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 43.0 | 3.64e-01 | 76.5% | 62.1% |
| 3994984 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 43.0 | 4.00e-01 | 74.5% | 90.8% |
| 3895845 | 6.1.1.3 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › IL1 | 0.61 | 52.0 | 3.89e-01 | 98.0% | 67.4% |
| 3214786 | 384.1.1.0 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like | 0.61 | 48.0 | 4.45e-01 | 94.1% | 67.1% |
| 5054208 | 251.1.1.1 ↗ | a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS | 0.61 | 45.0 | 3.83e-01 | 82.4% | 98.9% |
| 5021205 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.60 | 50.0 | 3.78e-01 | 96.1% | 53.1% |
| 3265494 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 43.0 | 4.47e-01 | 76.5% | 88.9% |
| 5041307 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 41.0 | 2.65e-01 | 72.5% | 82.3% |
| 3937712 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.60 | 47.0 | 4.30e-01 | 94.1% | 65.7% |
| 3621660 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.59 | 48.0 | 4.29e-01 | 94.1% | 66.7% |
| 5004174 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.58 | 49.0 | 3.70e-01 | 94.1% | 52.0% |
| 4990345 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 42.0 | 4.26e-01 | 80.4% | 100.0% |
| 3247147 | 5.1.12.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains | 0.58 | 49.0 | 3.06e-01 | 100.0% | 45.2% |
| 3185265 | 10.12.1.53 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 | 0.57 | 48.0 | 3.04e-01 | 98.0% | 92.6% |
| 4329624 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.57 | 47.0 | 3.81e-01 | 96.1% | 57.1% |
| 3927539 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 38.0 | 3.18e-01 | 74.5% | 37.9% |
| 4421975 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.56 | 43.0 | 4.21e-01 | 90.2% | 78.2% |
| 3597839 | 206.1.3.57 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › FAM91_C | 0.55 | 38.0 | 2.51e-01 | 74.5% | 15.2% |
| 5010624 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 46.0 | 3.25e-01 | 100.0% | 89.1% |
| 4024947 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.05e-01 | 78.4% | 62.6% |
| 3917008 | 382.1.1.2 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP | 0.54 | 40.0 | 3.64e-01 | 88.2% | 90.0% |
| 5008021 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.53 | 39.0 | 3.10e-01 | 84.3% | 86.2% |
| 3872625 | 11.1.1.787 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ITI_HC_C | 0.53 | 38.0 | 2.58e-01 | 82.4% | 83.6% |
| 3982411 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.52 | 41.0 | 3.86e-01 | 88.2% | 73.8% |
| 4030208 | 6.1.1.4 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin | 0.52 | 44.0 | 3.20e-01 | 100.0% | 43.8% |
| 3979564 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.52 | 41.0 | 3.85e-01 | 88.2% | 73.8% |
| 3388962 | 382.1.1.6 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR | 0.52 | 42.0 | 3.67e-01 | 100.0% | 85.6% |
| 3931978 | 387.1.7.1 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein | 0.52 | 36.0 | 3.69e-01 | 74.5% | 100.0% |
| 4006488 | 4959.1.1.0 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit | 0.52 | 41.0 | 3.82e-01 | 88.2% | 73.8% |
| 4929527 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.51 | 34.0 | 2.71e-01 | 74.5% | 30.0% |
| 4029989 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.51 | 45.0 | 4.39e-01 | 100.0% | 98.2% |
| 4861760 | 6.1.1.3 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › IL1 | 0.51 | 42.0 | 3.16e-01 | 100.0% | 55.2% |
D2
medium
residues 145-218