←Back to structures
IMGVR_UViG_3300035698_023746-3300035698-Ga0374944_608699_19423_20145
Arc-VirIMGVR_UViG_3300035698_023746-3300035698-Ga0374944_608699_19423_20145
Identity
- Kingdom:
- archaea
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-112
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8fazD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 47.0 | 3.72e-01 | 92.9% | 37.7% |
| 3rqzC00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.60 | 47.0 | 3.68e-01 | 100.0% | 38.4% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.57 | 48.0 | 3.03e-01 | 92.0% | 68.9% |
| 1sg4A01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.56 | 49.0 | 4.08e-01 | 98.2% | 77.3% |
| 2gh9A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 46.0 | 3.87e-01 | 89.3% | 81.8% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 48.0 | 3.79e-01 | 97.3% | 67.7% |
| 4ua8A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 43.0 | 3.61e-01 | 83.0% | 86.2% |
| 4avnA00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.54 | 46.0 | 3.20e-01 | 95.5% | 55.7% |
| 3aw9A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 46.0 | 3.93e-01 | 96.4% | 67.0% |
| 3d4iB01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 46.0 | 3.57e-01 | 92.9% | 98.0% |
| 5facA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.53 | 41.0 | 3.34e-01 | 93.8% | 42.5% |
| 3ndzA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 46.0 | 3.32e-01 | 100.0% | 86.1% |
| 4r27B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 46.0 | 3.15e-01 | 99.1% | 86.5% |
| 1uozA01 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.52 | 46.0 | 3.45e-01 | 100.0% | 70.6% |
| 7blfB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 45.0 | 3.20e-01 | 100.0% | 73.4% |
| 1b2rA02 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.51 | 41.0 | 3.63e-01 | 87.5% | 91.0% |
| 3h8lA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 4.03e-01 | 95.5% | 80.8% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.51 | 41.0 | 3.69e-01 | 86.6% | 95.5% |
| 2ehgA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 41.0 | 3.76e-01 | 87.5% | 77.2% |
| 2e9yB00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.51 | 43.0 | 3.16e-01 | 92.9% | 92.0% |
| 3ij6A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 45.0 | 3.34e-01 | 100.0% | 77.9% |
| 8dgeA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 42.0 | 3.01e-01 | 92.0% | 30.3% |
| 1z41A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 44.0 | 3.21e-01 | 100.0% | 84.0% |
| 2akoA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.50 | 41.0 | 3.28e-01 | 91.1% | 96.3% |
| 8gr2A01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.50 | 43.0 | 3.61e-01 | 95.5% | 74.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4935486 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.72 | 56.0 | 4.25e-01 | 100.0% | 37.1% |
| 5019947 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.68 | 60.0 | 4.69e-01 | 100.0% | 46.7% |
| 4958402 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.66 | 55.0 | 4.03e-01 | 100.0% | 34.5% |
| 4938359 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.66 | 56.0 | 4.14e-01 | 100.0% | 36.8% |
| None | — | 0.57 | 45.0 | 3.59e-01 | 88.4% | 42.3% | |
| 3711998 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.56 | 50.0 | 3.41e-01 | 100.0% | 63.6% |
| 3560657 | 601.1.1.59 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › HEAT_GCN1_2 | 0.56 | 47.0 | 4.13e-01 | 93.8% | 63.4% |
| 3249560 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.55 | 49.0 | 4.09e-01 | 100.0% | 75.5% |
| 4834102 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.55 | 37.0 | 3.10e-01 | 93.8% | 37.8% |
| 4945260 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.55 | 33.0 | 2.43e-01 | 75.9% | 22.8% |
| 4931546 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.55 | 44.0 | 3.81e-01 | 89.3% | 82.2% |
| 4954935 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.54 | 46.0 | 2.96e-01 | 97.3% | 58.7% |
| 3998381 | 2004.1.1.432 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 | 0.54 | 38.0 | 2.99e-01 | 93.8% | 33.1% |
| 3681983 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 40.0 | 4.16e-01 | 83.9% | 87.0% |
| 3613658 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.53 | 42.0 | 3.61e-01 | 87.5% | 81.6% |
| 4942946 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.52 | 42.0 | 3.44e-01 | 90.2% | 96.4% |
| 3494993 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.52 | 42.0 | 3.70e-01 | 89.3% | 94.1% |
| 4267550 | 2002.2.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Cellulases › Cellulases › Glyco_hydro_6 | 0.51 | 46.0 | 3.43e-01 | 100.0% | 69.9% |
| 3550790 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.51 | 45.0 | 2.95e-01 | 100.0% | 64.6% |
| 4155974 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.51 | 42.0 | 3.82e-01 | 94.6% | 66.0% |
| 3411706 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.51 | 40.0 | 3.54e-01 | 86.6% | 84.5% |
| None | — | 0.51 | 43.0 | 3.42e-01 | 93.8% | 68.2% | |
| 3594014 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.51 | 39.0 | 3.09e-01 | 85.7% | 38.3% |
| 5019172 | 7545.1.1.1 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE | 0.50 | 39.0 | 3.84e-01 | 100.0% | 75.2% |
| 3621730 | 2004.1.1.98 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad17 | 0.50 | 38.0 | 3.27e-01 | 89.3% | 48.6% |
D2
medium
residues 113-240
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v73A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.70 | 65.0 | 4.70e-01 | 99.2% | 39.3% |
| 4gu4A01 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.55 | 19.0 | 2.88e-01 | 92.2% | 74.4% |
| 7s0tF01 | 3.60.21.50 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › | 0.54 | 41.0 | 3.11e-01 | 80.5% | 91.1% |
| 3iveA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 46.0 | 3.55e-01 | 98.4% | 90.8% |
| 3tghA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 46.0 | 3.50e-01 | 99.2% | 85.4% |
| 2hy1A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 45.0 | 3.72e-01 | 94.5% | 97.4% |
| 3av0A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 45.0 | 3.59e-01 | 95.3% | 96.4% |
| 2wddA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.50 | 45.0 | 3.47e-01 | 98.4% | 88.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4370110 | 391.1.2.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SCRG1 | 0.58 | 22.0 | 3.26e-01 | 98.4% | 76.7% |
| 5023985 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.56 | 49.0 | 3.80e-01 | 96.9% | 88.6% |
| 3212577 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.55 | 43.0 | 3.22e-01 | 81.2% | 95.7% |
| 5042274 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.55 | 42.0 | 3.18e-01 | 80.5% | 94.8% |
| 4034458 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.54 | 48.0 | 3.68e-01 | 97.7% | 91.7% |
| 3340780 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 41.0 | 3.09e-01 | 80.5% | 55.6% |
| 4964125 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.53 | 47.0 | 3.78e-01 | 97.7% | 91.9% |
| 4985707 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.53 | 48.0 | 3.98e-01 | 99.2% | 97.3% |
| 4966372 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.53 | 47.0 | 3.56e-01 | 95.3% | 81.1% |
| 4949284 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.52 | 46.0 | 3.59e-01 | 98.4% | 93.0% |
| 3310233 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.52 | 45.0 | 3.35e-01 | 95.3% | 94.6% |
| 5055506 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.51 | 43.0 | 3.63e-01 | 91.4% | 85.9% |
| 2529872 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.50 | 44.0 | 3.60e-01 | 97.7% | 85.3% |