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IMGVR_UViG_3300035698_023746-3300035698-Ga0374944_608699_26131_27291

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300035698_023746-3300035698-Ga0374944_608699_26131_27291 ↗
Kingdom:: archaea

Quality

80.0 mean pLDDT

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-225

PDB

Domain cluster: rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323

D2 high residues 304-385

PDB

Domain cluster: rep: ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00047__D305-378

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hr8A02	3.30.250.10	Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain	0.76	56.0	5.89e-01	93.9%	85.3%
1xp8A02	3.30.250.10	Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain	0.76	53.0	5.93e-01	93.9%	98.3%
5jrjA02	3.30.250.10	Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain	0.75	52.0	5.83e-01	93.9%	100.0%
3e9lA02	1.20.80.40	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region	0.64	47.0	4.48e-01	98.8%	67.4%
3sp1A01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.61	47.0	3.36e-01	86.6%	41.2%
3d0sA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	38.0	3.91e-01	73.2%	92.5%
1nktA02	3.90.1440.10	Alpha Beta › Alpha-Beta Complex › Pre-protein croslinking domain of SecA › SecA, preprotein cross-linking domain	0.55	37.0	3.34e-01	70.7%	86.1%
1g7sA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	41.0	3.15e-01	86.6%	84.2%
1gd9A02	3.40.640.10	Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain)	0.53	44.0	3.31e-01	95.1%	98.7%
1sbxA00	3.10.260.20	Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski	0.52	35.0	3.32e-01	70.7%	83.0%
2o8eA01	3.40.1170.10	Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I	0.51	36.0	3.21e-01	73.2%	90.1%
1p4xA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	42.0	3.70e-01	96.3%	60.6%
2qsfA04	3.30.70.2460	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Rad4, beta-hairpin domain BHD3	0.50	32.0	3.43e-01	90.2%	75.7%
2jvuA00	2.60.40.2290	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.50	35.0	3.39e-01	74.4%	92.9%

ECOD (32)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3421663	502.1.1.1 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C	0.82	61.0	6.49e-01	100.0%	91.4%
3350669	502.1.1.1 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C	0.81	60.0	6.36e-01	100.0%	91.4%
4163672	502.1.1.1 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C	0.77	57.0	6.10e-01	100.0%	92.9%
3962196	502.1.1.0 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain	0.76	54.0	5.74e-01	95.1%	85.7%
4485228	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.76	55.0	3.60e-01	98.8%	17.7%
4214233	502.1.1.1 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C	0.76	56.0	5.64e-01	100.0%	77.1%
4144386	502.1.1.1 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C	0.76	57.0	6.08e-01	97.6%	92.9%
4650117	502.1.1.1 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C	0.75	57.0	5.76e-01	95.1%	81.2%
4100290	502.1.1.1 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C	0.75	53.0	5.36e-01	95.1%	75.0%
4098746	502.1.1.1 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C	0.74	53.0	5.35e-01	95.1%	76.2%
4504505	502.1.1.1 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C	0.73	50.0	5.62e-01	92.7%	96.7%
4575225	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.63	52.0	4.78e-01	92.7%	97.3%
None	—		0.62	49.0	3.29e-01	86.6%	39.7%
4947484	2005.1.1.12 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e	0.61	48.0	3.45e-01	86.6%	53.3%
None	—		0.61	48.0	3.35e-01	89.0%	43.0%
None	—		0.61	49.0	3.45e-01	90.2%	48.9%
None	—		0.61	48.0	3.57e-01	90.2%	56.2%
None	—		0.60	48.0	3.32e-01	89.0%	42.3%
4926863	2005.1.1.12 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e	0.60	47.0	3.24e-01	86.6%	41.0%
None	—		0.60	48.0	3.20e-01	90.2%	36.4%
5001837	2005.1.1.12 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e	0.60	48.0	3.42e-01	90.2%	50.4%
4074439	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.59	47.0	3.16e-01	90.2%	36.4%
4885816	375.1.1.10 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1e	0.59	47.0	3.43e-01	90.2%	51.4%
None	—		0.59	47.0	3.34e-01	89.0%	46.3%
None	—		0.59	47.0	3.23e-01	90.2%	40.9%
4259425	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.57	43.0	3.94e-01	86.6%	86.7%
4942997	2005.1.1.7 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d	0.54	45.0	3.09e-01	90.2%	44.7%
3317702	109.1.1.16 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_6	0.53	41.0	3.24e-01	82.9%	81.8%
4979519	242.2.1.2 ↗	a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N	0.52	33.0	3.40e-01	76.8%	66.3%
3396141	102.1.2.10 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage	0.52	40.0	2.78e-01	85.4%	73.4%
3220044	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	37.0	3.59e-01	78.0%	91.6%
5026112	3457.1.1.0 ↗	alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease	0.51	37.0	2.81e-01	79.3%	95.9%

D3 medium residues 230-297

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1g19A01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.73	41.0	2.81e-01	100.0%	16.5%
1d3bB00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.55	37.0	3.55e-01	100.0%	59.3%
2xzmZ00	3.30.1230.20	Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21	0.54	29.0	2.57e-01	94.1%	34.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1723386	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.57	32.0	3.76e-01	100.0%	84.1%