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IMGVR_UViG_3300036594_000030-3300036594-Ga0377203_001280_14904_15329

Arc-Vir

IMGVR_UViG_3300036594_000030-3300036594-Ga0377203_001280_14904_15329

Identity

Kingdom:
archaea

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.70 45.0 4.90e-01 100.0% 82.1%
3lkmA02 3.20.200.10 Alpha Beta › Alpha-Beta Barrel › Protein kinase-like fold › MHCK/EF2 kinase 0.53 36.0 3.39e-01 70.4% 84.4%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 39.0 2.53e-01 88.7% 66.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 41.0 3.78e-01 76.1% 56.7%
3587273 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 45.0 4.79e-01 94.4% 100.0%
3455670 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.56 47.0 4.24e-01 95.8% 91.0%
3641740 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.55 46.0 4.10e-01 98.6% 86.1%
3482935 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.54 33.0 3.16e-01 100.0% 47.8%
3937349 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 41.0 2.70e-01 85.9% 30.7%
5009817 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.51 40.0 2.69e-01 87.3% 73.6%
3576759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 31.0 3.15e-01 77.5% 60.0%
3233940 386.1.1.302 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29314, PF29318 0.51 35.0 3.20e-01 74.6% 100.0%
D2 high residues 79-129
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 47.0 3.99e-01 96.1% 53.3%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 3.26e-01 100.0% 31.6%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 43.0 4.22e-01 90.2% 83.6%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.53 36.0 3.00e-01 82.4% 38.9%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.63e-01 96.1% 86.8%
4g0aA01 3.90.1400.10 Alpha Beta › Alpha-Beta Complex › Rotavirus NSP2 fragment, N-terminal domain › Rotavirus NSP2 fragment, N-terminal domain 0.52 35.0 2.74e-01 76.5% 71.5%
2dqaA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.50 38.0 3.00e-01 86.3% 48.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3707415 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 50.0 3.37e-01 98.0% 47.4%
4931925 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.61e-01 88.2% 90.5%
4639076 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 37.0 3.14e-01 74.5% 35.8%
4989173 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.57 44.0 2.81e-01 90.2% 14.8%
3185844 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 40.0 3.65e-01 74.5% 81.4%
4443065 101.1.2.89 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.55 40.0 3.27e-01 78.4% 76.8%
4935256 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 37.0 2.43e-01 74.5% 91.6%
4307219 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.54 39.0 3.85e-01 90.2% 74.5%
5081495 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.37e-01 96.1% 72.5%
4205955 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.53 36.0 2.54e-01 74.5% 88.5%
3681410 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 42.0 3.60e-01 96.1% 54.7%
4997800 2002.1.1.74 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 0.53 43.0 2.71e-01 100.0% 61.7%
4174179 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 36.0 3.66e-01 86.3% 74.0%
4262261 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 36.0 3.60e-01 76.5% 96.4%
1413813 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 37.0 3.64e-01 90.2% 72.7%
4033493 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 37.0 3.71e-01 88.2% 72.7%
3407758 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 40.0 3.19e-01 90.2% 42.6%
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.53e-01 90.2% 69.1%
3507234 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.51 40.0 3.16e-01 88.2% 60.0%