Back to structures

IMGVR_UViG_3300036767_000231-3300036767-Ga0373645_0013252_191_928

Arc-Vir

IMGVR_UViG_3300036767_000231-3300036767-Ga0373645_0013252_191_928

Quality

95.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-121
PDB
D2 high residues 134-241
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 75.0 5.59e-01 100.0% 45.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 75.0 5.57e-01 100.0% 45.5%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 73.0 5.36e-01 100.0% 48.3%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 73.0 5.46e-01 100.0% 45.4%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 72.0 6.08e-01 100.0% 74.3%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 72.0 5.49e-01 100.0% 47.1%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 72.0 5.45e-01 100.0% 45.3%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 72.0 5.36e-01 100.0% 45.3%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 72.0 6.78e-01 100.0% 91.4%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 72.0 7.08e-01 100.0% 94.7%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 71.0 6.90e-01 100.0% 92.4%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 72.0 6.87e-01 100.0% 87.8%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 71.0 6.60e-01 100.0% 89.3%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 70.0 5.30e-01 100.0% 45.4%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 70.0 6.82e-01 100.0% 92.4%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 70.0 5.41e-01 98.1% 48.4%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 70.0 5.66e-01 100.0% 56.8%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 69.0 5.00e-01 100.0% 44.6%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 71.0 5.97e-01 100.0% 63.4%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 70.0 5.28e-01 100.0% 45.5%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 70.0 6.57e-01 100.0% 85.9%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 68.0 6.40e-01 100.0% 88.5%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 68.0 6.48e-01 100.0% 92.1%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 68.0 5.20e-01 100.0% 47.1%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 67.0 5.51e-01 100.0% 56.0%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.72 65.0 5.07e-01 100.0% 46.5%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 65.0 4.83e-01 100.0% 47.9%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.66 29.0 3.20e-01 100.0% 50.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 29.0 3.76e-01 100.0% 80.7%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.61 29.0 3.44e-01 87.0% 64.5%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.58 44.0 4.48e-01 100.0% 83.5%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 34.0 3.66e-01 78.7% 72.8%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 26.0 3.53e-01 80.6% 98.0%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 41.0 2.97e-01 80.6% 45.9%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 40.0 2.87e-01 77.8% 43.6%
8ew8A01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.51 39.0 3.11e-01 100.0% 38.4%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 31.0 3.59e-01 92.6% 90.1%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.50 42.0 2.87e-01 93.5% 95.9%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.50 36.0 2.52e-01 74.1% 34.1%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3873544 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.82 77.0 7.11e-01 100.0% 88.8%
3478160 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.82 76.0 7.15e-01 100.0% 92.2%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 76.0 6.97e-01 100.0% 89.6%
3932752 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 75.0 7.09e-01 100.0% 91.2%
3346536 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 75.0 6.71e-01 100.0% 85.5%
3788095 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 75.0 6.88e-01 100.0% 88.9%
4619259 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 75.0 6.71e-01 100.0% 82.1%
3210421 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 75.0 6.53e-01 100.0% 87.1%
3715457 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 74.0 6.56e-01 100.0% 92.1%
3623607 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 74.0 6.75e-01 100.0% 89.3%
3798354 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 74.0 6.84e-01 100.0% 92.6%
3743107 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.80 74.0 6.75e-01 100.0% 90.0%
3238130 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 74.0 6.64e-01 100.0% 84.8%
3407531 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 74.0 6.84e-01 100.0% 85.9%
3478975 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 74.0 6.82e-01 100.0% 87.4%
3936915 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 74.0 6.91e-01 100.0% 90.8%
4212381 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 74.0 6.80e-01 100.0% 85.9%
2834340 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.79 73.0 6.70e-01 100.0% 88.5%
3256904 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 74.0 7.00e-01 100.0% 94.4%
4625643 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.79 73.0 7.06e-01 100.0% 89.1%
5060716 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 73.0 6.86e-01 100.0% 90.8%
3387590 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 70.0 6.92e-01 100.0% 89.6%
3728061 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.79 74.0 6.83e-01 100.0% 86.5%
4992059 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 73.0 6.99e-01 100.0% 92.7%
3351103 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 73.0 6.72e-01 100.0% 84.4%
3599554 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 73.0 6.47e-01 100.0% 89.3%
3251868 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 73.0 6.63e-01 100.0% 90.0%
3397928 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 73.0 6.91e-01 100.0% 94.4%
4517015 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 73.0 6.93e-01 100.0% 91.1%
3292092 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 73.0 6.73e-01 100.0% 90.3%
4608521 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.78 73.0 5.84e-01 100.0% 74.5%
3624709 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 73.0 6.81e-01 100.0% 88.5%
5029787 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 73.0 7.01e-01 100.0% 91.7%
3230926 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 72.0 6.77e-01 100.0% 88.5%
4995028 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 72.0 6.83e-01 100.0% 93.6%
3743202 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 72.0 6.99e-01 100.0% 95.0%
2492036 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 72.0 6.76e-01 100.0% 86.0%
3507498 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.78 71.0 6.35e-01 100.0% 87.3%
4876750 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 72.0 6.81e-01 100.0% 87.2%
3785352 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.78 71.0 6.15e-01 100.0% 87.9%
4500973 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 71.0 6.82e-01 100.0% 90.2%
2392831 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 71.0 6.74e-01 100.0% 89.8%
2096126 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.77 71.0 6.84e-01 100.0% 90.2%
4372908 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 71.0 6.80e-01 100.0% 86.4%
5074320 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 71.0 6.68e-01 100.0% 91.5%
3193266 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.77 71.0 6.39e-01 100.0% 89.7%
4038410 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.77 71.0 6.45e-01 100.0% 92.9%
3702817 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 71.0 6.57e-01 100.0% 90.3%
3810053 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 71.0 6.22e-01 100.0% 89.7%
2878147 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.77 70.0 6.47e-01 100.0% 83.2%
4379629 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.77 71.0 6.82e-01 100.0% 90.0%
2805173 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 70.0 6.71e-01 100.0% 89.6%
3939755 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 71.0 6.31e-01 100.0% 83.8%
3932751 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 70.0 6.59e-01 100.0% 90.8%
4360456 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.77 70.0 6.60e-01 100.0% 86.2%
3499821 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.77 70.0 6.59e-01 100.0% 90.8%
3719897 227.1.1.18 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.76 70.0 6.66e-01 99.1% 90.4%
4542774 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.76 70.0 6.75e-01 100.0% 92.5%
3022412 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 69.0 6.31e-01 100.0% 86.6%
3244229 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 70.0 6.64e-01 100.0% 92.8%
5991 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 70.0 6.70e-01 100.0% 91.0%
4606763 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.76 70.0 6.73e-01 100.0% 91.7%
4633559 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.76 70.0 6.59e-01 100.0% 88.3%
1102993 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.76 69.0 6.31e-01 100.0% 76.8%
3936914 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 69.0 6.50e-01 100.0% 90.0%
4437554 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.76 69.0 6.60e-01 100.0% 89.6%
2325189 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.75 69.0 6.36e-01 100.0% 88.3%
3625037 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.75 69.0 6.40e-01 100.0% 92.6%
4162061 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.75 69.0 6.61e-01 100.0% 91.1%
4172290 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 69.0 6.49e-01 100.0% 89.2%
1924008 227.1.1.10 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.75 69.0 6.53e-01 100.0% 87.5%
5039219 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 68.0 6.52e-01 100.0% 89.6%
3597091 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 69.0 6.57e-01 100.0% 90.3%
3520418 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 68.0 6.10e-01 100.0% 90.0%
4287244 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.75 69.0 6.68e-01 100.0% 92.5%
3789625 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 69.0 6.35e-01 100.0% 91.9%
5039026 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 66.0 6.41e-01 100.0% 86.7%
4047098 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.75 69.0 6.69e-01 100.0% 91.7%
149160 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.74 68.0 6.22e-01 100.0% 88.7%
4024730 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.74 51.0 5.69e-01 70.4% 100.0%
4315973 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.74 68.0 6.50e-01 100.0% 89.6%
4939065 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.74 68.0 6.58e-01 100.0% 90.8%
1871497 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.74 66.0 6.41e-01 100.0% 88.2%
426904 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.73 67.0 6.43e-01 100.0% 88.6%
3719304 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 68.0 6.26e-01 100.0% 85.8%
3962048 227.1.1.15 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PF26035 0.70 55.0 5.68e-01 100.0% 89.0%
3983524 274.1.1.13 a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.61 43.0 3.89e-01 73.1% 97.3%
3633647 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 31.0 3.90e-01 88.9% 93.8%
2394538 2.1.1.101 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › KfrB 0.51 39.0 3.87e-01 81.5% 93.0%
3600075 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.99e-01 100.0% 39.6%
3939467 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.51 37.0 3.65e-01 76.9% 97.5%