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IMGVR_UViG_3300036964_000244-3300036964-Ga0377223_002568_243_359

Arc-Vir

IMGVR_UViG_3300036964_000244-3300036964-Ga0377223_002568_243_359

Identity

Kingdom:
archaea

Quality

78.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-37
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.93 77.0 6.69e-01 100.0% 61.8%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 71.0 6.43e-01 100.0% 68.6%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 68.0 6.42e-01 100.0% 75.6%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 71.0 5.61e-01 100.0% 46.7%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 68.0 6.28e-01 100.0% 70.8%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 66.0 5.32e-01 100.0% 46.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 68.0 5.13e-01 100.0% 40.2%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.80 67.0 6.18e-01 100.0% 84.0%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.80 68.0 4.06e-01 100.0% 14.5%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 64.0 6.19e-01 100.0% 81.8%
1f5qB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.76 61.0 4.53e-01 100.0% 40.4%
2ys9A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 65.0 5.29e-01 100.0% 58.6%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 56.0 4.63e-01 100.0% 55.1%
3bzcA04 1.10.150.310 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tex RuvX-like domain-like 0.70 60.0 4.11e-01 100.0% 38.6%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.70 56.0 4.39e-01 100.0% 41.6%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.66 52.0 4.19e-01 100.0% 50.0%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 53.0 4.40e-01 100.0% 61.3%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.64 53.0 4.58e-01 91.9% 67.9%
1cukA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.63 49.0 4.16e-01 100.0% 53.9%
1r1dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 50.0 3.08e-01 100.0% 42.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3997733 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 73.0 6.10e-01 100.0% 53.8%
3740014 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.85 71.0 5.89e-01 100.0% 58.6%
5034899 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.85 70.0 4.33e-01 100.0% 16.7%
4962703 101.1.1.555 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7119 0.83 71.0 5.80e-01 100.0% 90.0%
3207944 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 69.0 6.40e-01 100.0% 86.0%
3901968 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 65.0 6.47e-01 94.6% 97.5%
3706139 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 67.0 6.14e-01 100.0% 70.0%
3721414 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.82 69.0 6.56e-01 100.0% 82.2%
3985633 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.81 66.0 5.96e-01 100.0% 65.5%
3910504 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 67.0 6.23e-01 100.0% 82.0%
3365315 101.1.1.291 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26175 0.81 67.0 6.06e-01 100.0% 81.8%
4937703 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 62.0 6.34e-01 94.6% 100.0%
3928087 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.78 64.0 5.35e-01 100.0% 60.0%
2056486 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.76 60.0 5.37e-01 91.9% 74.5%
4995679 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 57.0 5.20e-01 89.2% 76.0%
5004578 101.1.1.545 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.70 56.0 5.04e-01 100.0% 66.7%
4933758 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 54.0 5.15e-01 89.2% 75.6%
4167193 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.68 56.0 5.32e-01 97.3% 88.9%
4937675 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 55.0 5.47e-01 100.0% 92.5%
3617967 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 3.95e-01 91.9% 78.7%