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IMGVR_UViG_3300036967_000398-3300036967-Ga0377227_005030_7703_7999
Arc-VirIMGVR_UViG_3300036967_000398-3300036967-Ga0377227_005030_7703_7999
Identity
- Kingdom:
- archaea
Quality
81.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 10-43
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3aqlA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.84 | 69.0 | 4.11e-01 | 100.0% | 13.7% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.82 | 66.0 | 4.90e-01 | 94.1% | 35.2% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.82 | 68.0 | 5.87e-01 | 100.0% | 63.2% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.78 | 60.0 | 4.35e-01 | 100.0% | 29.8% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.77 | 62.0 | 5.11e-01 | 100.0% | 49.3% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.77 | 58.0 | 4.19e-01 | 85.3% | 30.4% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.77 | 56.0 | 3.85e-01 | 88.2% | 21.7% |
| 7by3B01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.77 | 58.0 | 4.14e-01 | 91.2% | 27.2% |
| 3vdpA01 | 1.10.8.420 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecR Domain 1 | 0.77 | 65.0 | 5.76e-01 | 100.0% | 65.4% |
| 5vjhB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 66.0 | 3.99e-01 | 100.0% | 16.0% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.76 | 60.0 | 4.69e-01 | 100.0% | 40.0% |
| 8h6qD01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.76 | 63.0 | 3.67e-01 | 100.0% | 43.0% |
| 4d3pA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.75 | 57.0 | 3.80e-01 | 88.2% | 20.4% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.74 | 59.0 | 3.95e-01 | 100.0% | 23.2% |
| 1dt9A01 | 3.30.960.10 | Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 | 0.73 | 53.0 | 3.73e-01 | 85.3% | 25.7% |
| 4usaA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.71 | 57.0 | 3.99e-01 | 94.1% | 68.1% |
| 3o8jA02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.71 | 50.0 | 3.59e-01 | 82.4% | 26.3% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.71 | 53.0 | 4.66e-01 | 91.2% | 52.5% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 56.0 | 5.01e-01 | 100.0% | 69.1% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 54.0 | 3.66e-01 | 100.0% | 21.9% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.69 | 50.0 | 3.47e-01 | 100.0% | 21.0% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.69 | 49.0 | 4.19e-01 | 85.3% | 47.0% |
| 2d6fC03 | 1.10.150.380 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain | 0.68 | 51.0 | 4.67e-01 | 91.2% | 59.6% |
| 3fdiB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 56.0 | 3.62e-01 | 100.0% | 70.4% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 5.08e-01 | 100.0% | 82.6% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 51.0 | 4.53e-01 | 91.2% | 54.4% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.66 | 51.0 | 3.87e-01 | 88.2% | 62.6% |
| 3veaA02 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.66 | 52.0 | 4.54e-01 | 91.2% | 55.8% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.65 | 54.0 | 3.99e-01 | 100.0% | 34.0% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.64 | 47.0 | 3.80e-01 | 100.0% | 65.9% |
| 2p67A01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 42.0 | 3.71e-01 | 73.5% | 40.4% |
| 1u96A01 | 1.10.287.1130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone | 0.62 | 46.0 | 4.64e-01 | 85.3% | 91.2% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.61 | 44.0 | 3.27e-01 | 97.1% | 26.4% |
| 2dn0A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 48.0 | 3.91e-01 | 100.0% | 47.4% |
| 1n69B00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.57 | 42.0 | 3.54e-01 | 100.0% | 51.2% |
| 2nnwA01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.56 | 48.0 | 3.28e-01 | 100.0% | 93.4% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5056276 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.89 | 76.0 | 4.82e-01 | 100.0% | 21.3% |
| 4936146 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.88 | 74.0 | 6.39e-01 | 100.0% | 61.8% |
| 5009535 | 148.1.3.410 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF6955 | 0.86 | 72.0 | 5.21e-01 | 100.0% | 34.0% |
| 4959424 | 103.6.1.0 ↗ | alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain | 0.84 | 70.0 | 6.09e-01 | 100.0% | 61.8% |
| 3344802 | 6158.1.1.0 ↗ | alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region | 0.83 | 68.0 | 5.57e-01 | 100.0% | 50.8% |
| 5032213 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.83 | 62.0 | 3.73e-01 | 85.3% | 12.6% |
| 3481218 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.82 | 68.0 | 3.82e-01 | 100.0% | 9.0% |
| 4080196 | 102.1.1.40 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RecR_HhH | 0.80 | 64.0 | 5.75e-01 | 94.1% | 66.0% |
| 5003091 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.79 | 65.0 | 5.54e-01 | 100.0% | 56.7% |
| 4102625 | 132.3.1.1 ↗ | alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ › CsbD | 0.79 | 61.0 | 5.24e-01 | 94.1% | 98.3% |
| 5054867 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.78 | 59.0 | 4.99e-01 | 88.2% | 48.3% |
| 3589629 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.77 | 66.0 | 4.08e-01 | 100.0% | 49.2% |
| 4938057 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 58.0 | 3.99e-01 | 91.2% | 23.8% |
| 5077269 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 58.0 | 3.98e-01 | 91.2% | 23.3% |
| 3636418 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.76 | 58.0 | 3.46e-01 | 97.1% | 11.3% |
| 4042981 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.75 | 63.0 | 4.81e-01 | 100.0% | 40.0% |
| 3966856 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.75 | 57.0 | 5.39e-01 | 91.2% | 71.1% |
| 3620713 | 148.1.3.27 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_10 | 0.75 | 57.0 | 4.65e-01 | 94.1% | 45.3% |
| 4966251 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.75 | 57.0 | 3.65e-01 | 91.2% | 16.8% |
| 4938693 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.75 | 60.0 | 4.69e-01 | 100.0% | 40.0% |
| 4025664 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.74 | 58.0 | 5.22e-01 | 91.2% | 62.0% |
| 4549784 | 102.1.1.40 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RecR_HhH | 0.74 | 58.0 | 5.30e-01 | 94.1% | 66.0% |
| 4978168 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.74 | 55.0 | 3.78e-01 | 91.2% | 22.5% |
| 4263688 | 102.1.1.40 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RecR_HhH | 0.73 | 60.0 | 5.41e-01 | 97.1% | 66.0% |
| 3929290 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.73 | 58.0 | 4.81e-01 | 100.0% | 50.0% |
| 5057411 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.73 | 62.0 | 4.80e-01 | 100.0% | 42.5% |
| 4993076 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 56.0 | 3.87e-01 | 91.2% | 23.8% |
| 5067590 | 103.12.1.14 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 | 0.72 | 54.0 | 4.94e-01 | 91.2% | 60.0% |
| 3837790 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.72 | 60.0 | 4.30e-01 | 100.0% | 31.8% |
| 4963009 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 57.0 | 4.55e-01 | 100.0% | 42.5% |
| 4371048 | 102.1.1.40 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RecR_HhH | 0.71 | 57.0 | 5.41e-01 | 100.0% | 75.6% |
| 3589794 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 52.0 | 4.92e-01 | 97.1% | 68.0% |
| 4048893 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.70 | 52.0 | 4.45e-01 | 100.0% | 47.1% |
| 4092968 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.70 | 60.0 | 3.95e-01 | 100.0% | 23.4% |
| 3289310 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.69 | 57.0 | 5.06e-01 | 100.0% | 69.1% |
| 4652689 | 102.1.1.40 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RecR_HhH | 0.69 | 55.0 | 5.09e-01 | 100.0% | 68.0% |
| 5078800 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.68 | 51.0 | 3.49e-01 | 91.2% | 20.7% |
| 3640485 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.68 | 51.0 | 3.48e-01 | 100.0% | 21.8% |
| 3678066 | 101.1.11.40 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1677 | 0.68 | 54.0 | 4.52e-01 | 100.0% | 51.4% |
| 3960463 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.68 | 54.0 | 4.72e-01 | 100.0% | 63.3% |
| 5065662 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.68 | 55.0 | 4.54e-01 | 100.0% | 51.4% |
| 3469102 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.68 | 57.0 | 3.95e-01 | 97.1% | 29.2% |
| 4162420 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.67 | 51.0 | 3.57e-01 | 91.2% | 31.2% |
| 4201331 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.66 | 49.0 | 3.72e-01 | 88.2% | 30.5% |
| 5023675 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.66 | 55.0 | 3.74e-01 | 97.1% | 24.8% |
| 3498975 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 50.0 | 4.68e-01 | 94.1% | 68.9% |
| 3923696 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.64 | 48.0 | 3.84e-01 | 100.0% | 37.8% |
| 3253152 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.64 | 50.0 | 3.93e-01 | 100.0% | 38.9% |
| 4983508 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 48.0 | 4.11e-01 | 100.0% | 50.0% |
| 4544741 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.61 | 44.0 | 3.91e-01 | 88.2% | 65.0% |
D2
medium
residues 50-94
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.61 | 50.0 | 5.09e-01 | 100.0% | 100.0% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.51 | 43.0 | 3.48e-01 | 100.0% | 64.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029980 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.65 | 50.0 | 2.99e-01 | 100.0% | 12.1% |
| 222312 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 50.0 | 5.09e-01 | 100.0% | 100.0% |
| 3397821 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 42.0 | 2.95e-01 | 100.0% | 23.7% |
| 3258631 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.53 | 43.0 | 3.46e-01 | 100.0% | 45.7% |
| 3806578 | 376.1.1.59 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-B_box | 0.52 | 37.0 | 3.77e-01 | 97.8% | 82.2% |