Back to structures

IMGVR_UViG_3300037067_027639-3300037067-Ga0378408_0001213_1308_2147

Arc-Vir

IMGVR_UViG_3300037067_027639-3300037067-Ga0378408_0001213_1308_2147

Quality

72.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-95
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 46.0 4.15e-01 76.1% 47.1%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.96e-01 70.5% 60.2%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.60 42.0 4.45e-01 76.1% 83.3%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.58 45.0 4.68e-01 95.5% 91.5%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.95e-01 77.3% 68.6%
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.56 45.0 4.09e-01 100.0% 62.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.82e-01 73.9% 68.0%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.86e-01 77.3% 70.8%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 4.07e-01 76.1% 84.3%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.55 42.0 4.47e-01 95.5% 94.8%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.93e-01 77.3% 78.1%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.55 46.0 3.08e-01 100.0% 50.5%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.82e-01 78.4% 74.8%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.66e-01 78.4% 66.1%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.61e-01 76.1% 70.5%
1dc1A01 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.52 36.0 2.74e-01 71.6% 73.9%
1ayeA02 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 38.0 2.72e-01 80.7% 97.0%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.97e-01 86.4% 98.5%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 41.0 3.80e-01 94.3% 69.3%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 35.0 3.81e-01 78.4% 92.6%
3kdgA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.51 37.0 3.68e-01 78.4% 73.4%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.50 41.0 3.87e-01 96.6% 89.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944712 101.1.9.40 alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N 0.77 66.0 6.19e-01 92.0% 81.0%
4998593 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.77 60.0 5.48e-01 83.0% 66.1%
3163642 101.1.9.63 alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.74 67.0 6.25e-01 100.0% 82.7%
4033119 101.1.9.63 alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.72 59.0 5.66e-01 88.6% 81.0%
3586911 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 51.0 5.03e-01 75.0% 73.7%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 43.0 4.52e-01 71.6% 75.0%
5066057 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.63 50.0 5.01e-01 84.1% 91.1%
5027566 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 43.0 4.39e-01 77.3% 78.8%
4976773 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.58 42.0 3.90e-01 75.0% 63.6%
3509042 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.58e-01 72.7% 50.0%
4998580 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 4.16e-01 77.3% 73.3%
5005295 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.57 47.0 4.19e-01 90.9% 75.4%
3236563 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.57 31.0 2.74e-01 100.0% 36.0%
5041315 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 45.0 4.33e-01 86.4% 82.0%
5069500 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.87e-01 88.6% 72.0%
5070036 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.72e-01 84.1% 75.3%
4966558 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 4.20e-01 76.1% 80.0%
5062314 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 3.96e-01 92.0% 70.7%
4970516 2003.6.1.0 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.56 44.0 3.79e-01 94.3% 53.6%
4980445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.02e-01 94.3% 80.0%
3784212 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.98e-01 80.7% 69.5%
4970260 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.89e-01 92.0% 73.3%
4982343 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.88e-01 94.3% 64.5%
4404596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.56e-01 77.3% 56.2%
5076142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.93e-01 93.2% 71.6%
5058727 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.94e-01 94.3% 75.2%
5070276 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.54 46.0 3.92e-01 94.3% 75.2%
3282515 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.54 45.0 3.66e-01 93.2% 78.3%
4944735 101.1.2.542 alpha arrays › HTH › HTH › winged helix domain › ATPase_2 0.54 44.0 3.98e-01 90.9% 78.4%
5058943 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 4.29e-01 98.9% 87.5%
5052844 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 42.0 3.24e-01 86.4% 41.0%
5062171 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 3.91e-01 97.7% 90.0%
2409292 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 39.0 3.70e-01 77.3% 70.2%
3640260 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 45.0 3.43e-01 93.2% 85.4%
3898882 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.41e-01 75.0% 62.6%
5028348 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.50 43.0 3.32e-01 93.2% 76.4%
D2 high residues 110-155
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4didB01 1.20.58.450 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog 0.79 62.0 4.61e-01 84.8% 74.6%
2xd3A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.79 60.0 3.93e-01 84.8% 20.1%
1zymA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.78 68.0 4.93e-01 97.8% 45.2%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.78 63.0 4.98e-01 91.3% 49.0%
1uxtA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.78 63.0 3.84e-01 89.1% 15.4%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 65.0 5.05e-01 95.7% 71.6%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 61.0 5.62e-01 84.8% 72.4%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.76 60.0 4.17e-01 89.1% 27.1%
5ekcF01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.76 60.0 3.68e-01 89.1% 15.0%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 64.0 5.25e-01 93.5% 89.0%
1t90A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.75 58.0 3.59e-01 87.0% 14.6%
4yt2A02 1.20.120.1300 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain 0.75 58.0 4.56e-01 89.1% 40.6%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.75 60.0 3.73e-01 89.1% 17.3%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 63.0 5.10e-01 93.5% 83.9%
3c24A02 1.10.3640.10 Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal 0.75 59.0 4.67e-01 89.1% 49.0%
2hg2A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.75 60.0 3.66e-01 89.1% 15.4%
3r64A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.75 58.0 3.54e-01 87.0% 14.4%
3pqaB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.74 58.0 3.62e-01 89.1% 16.2%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 5.40e-01 84.8% 76.4%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.73 56.0 4.39e-01 82.6% 39.6%
3uorB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.73 59.0 3.90e-01 95.7% 21.4%
4i3vA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.73 58.0 3.57e-01 89.1% 16.4%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.73 56.0 3.87e-01 84.8% 27.1%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.72 62.0 3.78e-01 100.0% 15.9%
4i8qA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.72 56.0 3.45e-01 89.1% 14.6%
1euhA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.72 56.0 3.47e-01 89.1% 16.1%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.71 55.0 4.79e-01 84.8% 95.7%
4ovjA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.71 54.0 3.57e-01 89.1% 19.1%
4nmyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.71 51.0 3.37e-01 78.3% 18.8%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.71 56.0 4.61e-01 93.5% 48.2%
3vokA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.71 54.0 3.70e-01 87.0% 25.0%
3rh9A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.70 55.0 3.40e-01 91.3% 15.2%
1mjtB01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.69 51.0 3.83e-01 87.0% 30.2%
1qusA01 1.10.8.350 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase 0.69 52.0 3.87e-01 82.6% 31.9%
4mfiA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.69 54.0 3.18e-01 91.3% 80.1%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.68 56.0 3.82e-01 91.3% 28.2%
1ez0B01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.68 56.0 3.44e-01 100.0% 47.1%
4ne4A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 53.0 3.63e-01 97.8% 24.0%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.67 59.0 4.89e-01 100.0% 88.9%
5vjhB03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 49.0 3.24e-01 82.6% 17.8%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.89e-01 100.0% 84.6%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.62 48.0 4.40e-01 93.5% 63.9%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 50.0 4.55e-01 93.5% 73.0%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 49.0 3.61e-01 97.8% 33.1%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 52.0 4.47e-01 95.7% 62.0%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 3.75e-01 97.8% 77.9%
1rsoA01 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 50.0 4.86e-01 93.5% 92.2%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 51.0 4.33e-01 95.7% 58.7%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.60 43.0 3.09e-01 78.3% 27.1%
3etuA01 1.10.287.3290 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 49.0 4.40e-01 100.0% 66.2%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.59 51.0 3.46e-01 100.0% 46.6%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.59 49.0 4.28e-01 93.5% 62.0%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.58 48.0 4.08e-01 100.0% 92.0%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 46.0 3.70e-01 97.8% 42.9%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.58 49.0 3.76e-01 100.0% 51.3%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 44.0 3.52e-01 97.8% 42.6%
3sszA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 43.0 3.26e-01 97.8% 32.3%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 39.0 3.79e-01 100.0% 61.8%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 45.0 3.56e-01 100.0% 72.3%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.50 39.0 3.93e-01 97.8% 90.0%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4042981 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.91 69.0 5.52e-01 87.0% 43.5%
5036826 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.90 66.0 5.38e-01 80.4% 45.0%
4929489 101.1.2.897 alpha arrays › HTH › HTH › winged helix domain › Zn_ribbon_2 0.87 64.0 5.64e-01 78.3% 55.4%
3215052 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.86 67.0 5.34e-01 84.8% 44.7%
4510528 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.85 63.0 5.02e-01 87.0% 41.1%
4600685 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.84 71.0 4.89e-01 100.0% 30.0%
3552352 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.83 65.0 5.23e-01 84.8% 45.9%
3943444 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.80 71.0 4.32e-01 100.0% 61.3%
3923696 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.80 63.0 5.05e-01 87.0% 44.4%
5065662 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.80 66.0 5.70e-01 91.3% 61.4%
4968245 1076.1.1.1 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.80 69.0 4.48e-01 100.0% 54.7%
3669585 109.4.1.1475 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27629 0.79 67.0 3.78e-01 100.0% 12.2%
4183750 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.78 56.0 4.65e-01 76.1% 45.0%
4582471 3355.1.1.11 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › GntP_permease 0.77 66.0 3.83e-01 100.0% 72.2%
4466218 3355.1.1.8 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_H_antiporter 0.77 65.0 3.78e-01 100.0% 71.2%
5065888 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.77 63.0 4.10e-01 91.3% 23.0%
1889963 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.77 62.0 3.81e-01 89.1% 16.0%
3947811 3355.1.1.11 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › GntP_permease 0.77 66.0 3.81e-01 100.0% 72.7%
4984680 3962.1.1.1 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › HsdM_N 0.76 68.0 4.56e-01 100.0% 30.0%
4936146 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.75 58.0 5.47e-01 84.8% 70.9%
4150602 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.75 65.0 3.94e-01 100.0% 43.5%
5003091 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.74 63.0 5.78e-01 97.8% 73.3%
3484301 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 54.0 3.70e-01 80.4% 22.5%
3469102 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 53.0 3.98e-01 80.4% 30.0%
3589629 307.1.1.3 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.74 61.0 3.94e-01 91.3% 22.1%
5062416 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.73 60.0 3.87e-01 91.3% 59.5%
3799156 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 57.0 4.82e-01 84.8% 54.1%
3971064 3226.1.1.5 alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › BenE 0.72 60.0 3.56e-01 100.0% 74.0%
4995050 5051.1.1.3 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF 0.72 61.0 3.52e-01 100.0% 53.3%
3598977 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 59.0 4.88e-01 93.5% 72.9%
4274974 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.72 54.0 4.22e-01 82.6% 38.0%
3995291 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.71 53.0 4.85e-01 87.0% 60.0%
4020566 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.71 57.0 3.47e-01 91.3% 13.2%
3503552 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.71 62.0 4.42e-01 100.0% 77.7%
4941372 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.70 56.0 4.67e-01 91.3% 84.7%
3651776 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.69 58.0 3.81e-01 100.0% 22.6%
3580853 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 5.08e-01 100.0% 67.7%
3357244 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.68 56.0 4.30e-01 100.0% 41.0%
3307959 3835.1.1.3 alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › DUF842 0.67 52.0 4.76e-01 91.3% 67.7%
4937556 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.66 51.0 4.72e-01 93.5% 66.7%
3680918 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.65 52.0 4.71e-01 93.5% 72.3%
4020473 609.1.1.0 alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase 0.63 53.0 3.94e-01 97.8% 38.4%
D3 high residues 193-270
PDB
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 43.0 4.64e-01 100.0% 76.5%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 37.0 3.51e-01 93.6% 47.3%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 37.0 3.15e-01 93.6% 37.2%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 36.0 3.52e-01 70.5% 51.7%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.60e-01 100.0% 77.1%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.91e-01 83.3% 65.6%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.43e-01 83.3% 49.2%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.73e-01 82.1% 64.2%
4mhxA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.53 42.0 2.67e-01 89.7% 51.2%
2z61A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 45.0 3.40e-01 98.7% 86.5%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 46.0 4.06e-01 100.0% 70.4%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.51 42.0 3.25e-01 87.2% 52.6%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 4.05e-01 84.6% 88.6%
6zwwC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 3.06e-01 84.6% 87.9%
3nroA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.50 44.0 3.17e-01 100.0% 81.7%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3366705 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.81 47.0 5.16e-01 97.4% 70.8%
3941757 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.78 70.0 5.91e-01 100.0% 63.1%
4033072 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.78 70.0 6.85e-01 100.0% 96.5%
3588288 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.77 68.0 5.51e-01 100.0% 54.7%
4401871 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 45.0 5.28e-01 98.7% 85.5%
3986225 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.75 67.0 4.93e-01 100.0% 40.0%
3232782 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 50.0 5.26e-01 98.7% 77.1%
3978692 101.1.9.143 alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.71 58.0 4.64e-01 97.4% 45.3%
4460243 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.69 44.0 5.11e-01 98.7% 90.9%
3616301 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.68 40.0 4.67e-01 92.3% 83.6%
5054122 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.67 44.0 3.44e-01 89.7% 32.5%
4585912 101.1.2.603 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 0.65 44.0 2.78e-01 89.7% 14.4%
4952560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 40.0 3.76e-01 84.6% 51.6%
3713148 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 4.35e-01 79.5% 76.8%
5027566 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 5.09e-01 100.0% 85.9%
3332597 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.59 42.0 3.06e-01 76.9% 62.9%
4966558 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.34e-01 100.0% 75.3%
4980261 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 51.0 4.61e-01 100.0% 73.3%
5059914 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.40e-01 100.0% 72.0%
5062795 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 3.70e-01 76.9% 68.6%
4976773 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.56 48.0 4.26e-01 100.0% 67.3%
3608929 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 43.0 2.78e-01 85.9% 38.7%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 4.61e-01 100.0% 93.8%
5058727 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 48.0 3.92e-01 100.0% 55.2%
4998735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 47.0 3.95e-01 100.0% 68.9%
3385549 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.53 36.0 2.82e-01 73.1% 79.5%
3468397 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.52 47.0 4.06e-01 100.0% 82.5%
4927033 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.52 40.0 3.87e-01 79.5% 82.4%
4954701 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.52 38.0 3.52e-01 80.8% 72.4%
3590878 7569.1.1.1 a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.51 35.0 2.70e-01 74.4% 58.1%
4997255 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 4.05e-01 100.0% 76.0%
3343334 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.51 43.0 3.53e-01 94.9% 65.5%
5050784 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 42.0 4.06e-01 98.7% 81.1%