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IMGVR_UViG_3300037259_000461-3300037259-Ga0394886_011071_1252_2151
Arc-VirIMGVR_UViG_3300037259_000461-3300037259-Ga0394886_011071_1252_2151
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-62
Domain cluster:
rep: term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00125__D2-65
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00521.27 best | DNA_topoisoIV | 33.8 | 2.50e-08 | 100.0% | 11.8% |
CATH (76)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.95 | 89.0 | 7.20e-01 | 100.0% | 57.4% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.75 | 64.0 | 5.08e-01 | 100.0% | 50.0% |
| 3wx4A00 | 3.30.70.2770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 60.0 | 5.00e-01 | 100.0% | 54.1% |
| 1i6uA01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.71 | 48.0 | 4.51e-01 | 87.0% | 57.4% |
| 3h7hB00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.69 | 60.0 | 5.02e-01 | 100.0% | 57.9% |
| 4e9jA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.68 | 58.0 | 5.43e-01 | 98.1% | 76.8% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 57.0 | 4.81e-01 | 100.0% | 58.2% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.68 | 55.0 | 4.28e-01 | 100.0% | 38.8% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.67 | 53.0 | 4.70e-01 | 100.0% | 57.6% |
| 2pd1A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 55.0 | 4.74e-01 | 100.0% | 56.8% |
| 3o6qA02 | 3.30.70.2720 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 56.0 | 4.52e-01 | 100.0% | 81.6% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.66 | 51.0 | 3.77e-01 | 100.0% | 31.0% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 50.0 | 4.66e-01 | 100.0% | 64.9% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 53.0 | 4.52e-01 | 100.0% | 56.4% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 53.0 | 4.72e-01 | 100.0% | 70.1% |
| 2wbmA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 50.0 | 4.72e-01 | 100.0% | 70.0% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 53.0 | 4.35e-01 | 100.0% | 50.9% |
| 1q8bA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 52.0 | 4.57e-01 | 100.0% | 61.3% |
| 6lpnA04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 50.0 | 4.31e-01 | 100.0% | 52.6% |
| 4p6qA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 53.0 | 4.80e-01 | 100.0% | 68.4% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 52.0 | 4.50e-01 | 100.0% | 59.4% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.63 | 50.0 | 4.28e-01 | 100.0% | 52.7% |
| 2cxcA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.63 | 51.0 | 4.83e-01 | 94.4% | 76.8% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 53.0 | 4.89e-01 | 100.0% | 76.7% |
| 4pcqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.63 | 50.0 | 4.52e-01 | 100.0% | 61.9% |
| 3e8oB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 51.0 | 4.33e-01 | 100.0% | 53.0% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 50.0 | 4.28e-01 | 100.0% | 52.5% |
| 3qktD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 52.0 | 3.31e-01 | 100.0% | 18.6% |
| 1y0hB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 52.0 | 4.40e-01 | 100.0% | 56.1% |
| 2x7gA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 42.0 | 3.69e-01 | 79.6% | 44.3% |
| 4hl9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 49.0 | 4.33e-01 | 100.0% | 60.6% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.61 | 49.0 | 4.47e-01 | 98.1% | 67.9% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.61 | 46.0 | 4.24e-01 | 85.2% | 64.0% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 52.0 | 4.29e-01 | 98.1% | 61.4% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 51.0 | 4.25e-01 | 100.0% | 63.1% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 50.0 | 4.31e-01 | 100.0% | 56.7% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 50.0 | 4.02e-01 | 100.0% | 44.0% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 49.0 | 4.20e-01 | 100.0% | 55.3% |
| 1i94H01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.61 | 48.0 | 4.29e-01 | 87.0% | 66.7% |
| 4pg4B03 | 3.30.70.3100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 48.0 | 4.40e-01 | 100.0% | 66.7% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 50.0 | 4.27e-01 | 100.0% | 56.1% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 48.0 | 4.35e-01 | 94.4% | 96.3% |
| 2anrA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.60 | 51.0 | 4.67e-01 | 100.0% | 77.3% |
| 2dhgA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 50.0 | 4.53e-01 | 100.0% | 74.7% |
| 3wy7D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 50.0 | 3.94e-01 | 100.0% | 44.2% |
| 4bpeC01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.59 | 50.0 | 4.29e-01 | 98.1% | 60.9% |
| 3dgcS01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 42.0 | 3.49e-01 | 77.8% | 76.5% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 48.0 | 4.41e-01 | 100.0% | 70.9% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 47.0 | 4.25e-01 | 100.0% | 65.5% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 52.0 | 4.29e-01 | 100.0% | 59.8% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 47.0 | 4.10e-01 | 100.0% | 55.7% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 47.0 | 4.08e-01 | 98.1% | 54.7% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 49.0 | 3.40e-01 | 100.0% | 68.5% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 47.0 | 4.23e-01 | 100.0% | 64.7% |
| 4bkwA03 | 3.30.500.40 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.58 | 47.0 | 3.77e-01 | 98.1% | 48.4% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 48.0 | 4.10e-01 | 100.0% | 57.1% |
| 2qmlA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 46.0 | 3.31e-01 | 98.1% | 63.7% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.57 | 45.0 | 4.17e-01 | 100.0% | 70.7% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.57 | 46.0 | 3.97e-01 | 100.0% | 55.8% |
| 6l2cB00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.56 | 47.0 | 2.87e-01 | 100.0% | 47.4% |
| 4ivkA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 48.0 | 2.91e-01 | 100.0% | 91.3% |
| 3tqfA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 40.0 | 2.93e-01 | 79.6% | 27.3% |
| 3mwbB03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 45.0 | 3.91e-01 | 100.0% | 60.0% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 37.0 | 2.75e-01 | 77.8% | 23.0% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 45.0 | 3.94e-01 | 100.0% | 67.8% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.53 | 40.0 | 3.02e-01 | 81.5% | 75.4% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.53 | 41.0 | 2.87e-01 | 90.7% | 47.6% |
| 1i5eA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 41.0 | 2.91e-01 | 94.4% | 39.9% |
| 3w1yB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 36.0 | 3.06e-01 | 74.1% | 41.3% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 40.0 | 2.87e-01 | 94.4% | 38.9% |
| 1hywA00 | 3.30.1580.10 | Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W | 0.52 | 34.0 | 3.35e-01 | 75.9% | 62.1% |
| 3lw6A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.52 | 43.0 | 2.91e-01 | 100.0% | 62.7% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.45e-01 | 85.2% | 77.8% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.50 | 34.0 | 2.85e-01 | 74.1% | 36.3% |
| 4ciuA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 33.0 | 2.85e-01 | 100.0% | 39.8% |
| 1z90B01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 38.0 | 2.46e-01 | 92.6% | 85.0% |
ECOD (82)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3962339 | 4014.1.1.0 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase | 0.98 | 94.0 | 6.18e-01 | 100.0% | 29.7% |
| 4855517 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.98 | 93.0 | 5.86e-01 | 100.0% | 23.9% |
| 396210 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.97 | 93.0 | 5.76e-01 | 100.0% | 22.9% |
| 4624017 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.95 | 89.0 | 5.93e-01 | 100.0% | 30.6% |
| 3590557 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.92 | 84.0 | 5.54e-01 | 100.0% | 27.7% |
| 4946212 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.90 | 82.0 | 5.50e-01 | 100.0% | 30.8% |
| 4024263 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.86 | 78.0 | 5.06e-01 | 100.0% | 27.9% |
| 3973568 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.81 | 67.0 | 5.51e-01 | 100.0% | 51.6% |
| 4664962 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.81 | 65.0 | 5.38e-01 | 100.0% | 50.5% |
| 4970136 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.80 | 65.0 | 5.41e-01 | 100.0% | 51.6% |
| 4403875 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.79 | 64.0 | 5.33e-01 | 100.0% | 51.6% |
| 5016738 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.79 | 65.0 | 5.34e-01 | 100.0% | 51.6% |
| 3278348 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.78 | 65.0 | 5.43e-01 | 100.0% | 54.4% |
| 4930385 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.75 | 59.0 | 5.33e-01 | 100.0% | 62.7% |
| 4861745 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.75 | 55.0 | 5.29e-01 | 88.9% | 69.4% |
| 5018607 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.74 | 62.0 | 5.27e-01 | 100.0% | 56.7% |
| 2672260 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.74 | 62.0 | 5.14e-01 | 100.0% | 53.1% |
| 4619882 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.73 | 60.0 | 5.38e-01 | 100.0% | 65.0% |
| 3267362 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.72 | 63.0 | 5.45e-01 | 100.0% | 63.5% |
| 4951800 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.72 | 60.0 | 5.01e-01 | 100.0% | 53.7% |
| 5015450 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.71 | 54.0 | 4.84e-01 | 100.0% | 57.5% |
| 4959923 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.71 | 53.0 | 4.96e-01 | 100.0% | 64.3% |
| 4980882 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.70 | 60.0 | 5.18e-01 | 100.0% | 63.3% |
| 2455618 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.70 | 57.0 | 4.44e-01 | 100.0% | 40.6% |
| 3486305 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.69 | 55.0 | 5.40e-01 | 100.0% | 83.3% |
| 3243593 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.68 | 55.0 | 4.61e-01 | 100.0% | 49.5% |
| 5052421 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.68 | 58.0 | 4.90e-01 | 100.0% | 56.8% |
| 5040618 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.68 | 60.0 | 5.06e-01 | 100.0% | 63.3% |
| 4940919 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.68 | 57.0 | 3.93e-01 | 98.1% | 27.1% |
| 3619851 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.68 | 54.0 | 4.74e-01 | 100.0% | 57.8% |
| 3451276 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 55.0 | 4.69e-01 | 100.0% | 54.0% |
| 3438053 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 54.0 | 5.00e-01 | 100.0% | 70.7% |
| 5023279 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.66 | 47.0 | 4.60e-01 | 96.3% | 70.0% |
| 4979771 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.66 | 49.0 | 4.49e-01 | 100.0% | 58.7% |
| 3831038 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 55.0 | 5.01e-01 | 100.0% | 70.7% |
| 4538961 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.65 | 54.0 | 4.97e-01 | 100.0% | 77.3% |
| 3368713 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.65 | 53.0 | 4.88e-01 | 96.3% | 70.7% |
| 3680527 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.65 | 52.0 | 4.83e-01 | 98.1% | 74.7% |
| 3438815 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.65 | 51.0 | 4.51e-01 | 100.0% | 58.8% |
| 3636631 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 52.0 | 4.54e-01 | 100.0% | 58.8% |
| 4143106 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 51.0 | 4.77e-01 | 100.0% | 71.4% |
| 4956868 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.64 | 54.0 | 3.65e-01 | 100.0% | 24.4% |
| 3348248 | 3012.1.1.14 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › KH_2 | 0.64 | 53.0 | 4.99e-01 | 98.1% | 82.9% |
| 5028447 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.64 | 53.0 | 4.58e-01 | 100.0% | 60.2% |
| 4946216 | 304.4.1.83 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HTH_24 | 0.63 | 50.0 | 4.02e-01 | 100.0% | 41.6% |
| 4943756 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.63 | 52.0 | 4.18e-01 | 100.0% | 79.2% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.62 | 52.0 | 4.71e-01 | 100.0% | 77.2% |
| 3594650 | 4014.1.1.0 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase | 0.62 | 51.0 | 3.74e-01 | 96.3% | 31.9% |
| 3412297 | 2002.1.1.260 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › R1_ABCA1 | 0.62 | 46.0 | 3.67e-01 | 100.0% | 37.1% |
| 3965385 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.61 | 49.0 | 4.71e-01 | 100.0% | 78.6% |
| 3250368 | 304.4.1.8 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › rhaM | 0.61 | 48.0 | 3.98e-01 | 100.0% | 49.2% |
| 3815383 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 51.0 | 4.50e-01 | 100.0% | 63.5% |
| 4932197 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.60 | 47.0 | 4.49e-01 | 100.0% | 72.9% |
| 3426109 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 50.0 | 4.10e-01 | 100.0% | 50.0% |
| 1039103 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.60 | 48.0 | 4.22e-01 | 100.0% | 60.0% |
| 3650582 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 49.0 | 4.67e-01 | 100.0% | 79.7% |
| 4032231 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 47.0 | 4.47e-01 | 100.0% | 74.3% |
| 5029856 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.60 | 50.0 | 4.41e-01 | 100.0% | 71.8% |
| 3957133 | 7581.1.1.22 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt | 0.59 | 43.0 | 2.92e-01 | 77.8% | 87.6% |
| 4263573 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.59 | 48.0 | 4.47e-01 | 100.0% | 74.7% |
| 3284562 | 304.8.1.9 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 | 0.59 | 48.0 | 4.29e-01 | 100.0% | 63.5% |
| 4961958 | 5001.1.1.292 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM | 0.58 | 46.0 | 3.13e-01 | 90.7% | 44.0% |
| 3675128 | 304.9.1.20 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_8 | 0.58 | 48.0 | 4.51e-01 | 100.0% | 78.6% |
| 4988966 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.58 | 46.0 | 4.33e-01 | 100.0% | 72.0% |
| 3969151 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.58 | 47.0 | 4.30e-01 | 100.0% | 71.2% |
| 3669120 | 304.8.1.58 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ABCA12_C | 0.58 | 46.0 | 4.25e-01 | 100.0% | 66.3% |
| 3516524 | 3680.1.1.1 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C | 0.58 | 46.0 | 3.56e-01 | 98.1% | 42.1% |
| 5056500 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.57 | 46.0 | 4.17e-01 | 100.0% | 69.4% |
| 3325750 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.56 | 45.0 | 4.16e-01 | 100.0% | 68.8% |
| 4302656 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.55 | 40.0 | 4.25e-01 | 77.8% | 95.6% |
| 3662330 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 41.0 | 4.15e-01 | 94.4% | 85.5% |
| 1247620 | 101.1.1.72 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GP3_package | 0.54 | 40.0 | 3.02e-01 | 81.5% | 72.7% |
| 3234725 | 387.1.5.13 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Antimicrobial25 | 0.54 | 41.0 | 3.97e-01 | 88.9% | 87.3% |
| 3708820 | 7581.1.1.22 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt | 0.53 | 43.0 | 2.73e-01 | 90.7% | 26.7% |
| 4965147 | 5001.1.1.292 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM | 0.53 | 41.0 | 2.81e-01 | 90.7% | 40.9% |
| 3750883 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.53 | 38.0 | 2.81e-01 | 81.5% | 67.4% |
| 3978402 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.52 | 46.0 | 2.96e-01 | 100.0% | 88.5% |
| 4371656 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.52 | 41.0 | 3.65e-01 | 100.0% | 58.9% |
| 4950083 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 43.0 | 3.60e-01 | 98.1% | 87.4% |
| 3507442 | 7581.1.1.1 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N | 0.52 | 45.0 | 2.85e-01 | 100.0% | 82.1% |
| 5003874 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.51 | 38.0 | 3.17e-01 | 90.7% | 55.0% |
| 3466238 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.51 | 42.0 | 2.56e-01 | 100.0% | 31.6% |
D2
high
residues 83-226
Domain cluster:
rep: IMGVR_UViG_3300022161_001637-3300022161-Ga0213931_10010881__D368-463
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00521.27 best | DNA_topoisoIV | 64.4 | 1.30e-17 | 95.8% | 29.0% |
D3
high
residues 249-298
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03989.19 best | DNA_gyraseA_C | 28.9 | 8.50e-07 | 78.0% | 75.0% |
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1suuA00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.86 | 75.0 | 4.59e-01 | 98.0% | 16.7% |
| 1wp5A00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.84 | 73.0 | 4.38e-01 | 98.0% | 15.2% |
| 3uc1A00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.84 | 74.0 | 4.48e-01 | 98.0% | 17.3% |
| 3l6vA00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.80 | 68.0 | 4.17e-01 | 98.0% | 15.7% |
| 2o2zA00 | 3.40.50.10680 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains | 0.72 | 48.0 | 2.92e-01 | 100.0% | 11.3% |
| 5owvD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 53.0 | 3.44e-01 | 100.0% | 18.9% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 52.0 | 4.50e-01 | 98.0% | 53.2% |
| 6vtmB00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.66 | 51.0 | 4.05e-01 | 100.0% | 42.7% |
| 2lcjA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.65 | 58.0 | 3.90e-01 | 100.0% | 46.5% |
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.65 | 57.0 | 3.93e-01 | 100.0% | 41.2% |
| 2imzA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.64 | 55.0 | 4.01e-01 | 100.0% | 47.9% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.63 | 48.0 | 3.87e-01 | 100.0% | 41.8% |
| 5o9iA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.63 | 55.0 | 3.81e-01 | 100.0% | 41.5% |
| 2waaA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 49.0 | 3.72e-01 | 98.0% | 35.8% |
| 4a4yA01 | 2.60.200.50 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.62 | 55.0 | 4.37e-01 | 98.0% | 95.9% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 49.0 | 4.13e-01 | 100.0% | 50.6% |
| 6m3aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 50.0 | 4.59e-01 | 98.0% | 69.7% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.61 | 52.0 | 4.00e-01 | 98.0% | 44.4% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 52.0 | 4.76e-01 | 98.0% | 72.7% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 52.0 | 4.34e-01 | 98.0% | 65.1% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.60 | 51.0 | 3.94e-01 | 100.0% | 45.8% |
| 3bh1A03 | 3.40.140.40 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain | 0.60 | 52.0 | 3.76e-01 | 100.0% | 74.0% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 51.0 | 4.36e-01 | 98.0% | 68.7% |
| 4c91A04 | 2.60.120.1620 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 51.0 | 3.48e-01 | 98.0% | 51.3% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 51.0 | 4.92e-01 | 98.0% | 98.3% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 51.0 | 4.95e-01 | 98.0% | 96.4% |
| 1t3qC02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.59 | 51.0 | 3.90e-01 | 100.0% | 88.1% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 49.0 | 4.53e-01 | 96.0% | 72.7% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 48.0 | 4.84e-01 | 90.0% | 91.8% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.58 | 50.0 | 4.10e-01 | 100.0% | 57.3% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.57 | 48.0 | 4.60e-01 | 94.0% | 100.0% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 50.0 | 3.83e-01 | 100.0% | 46.2% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 46.0 | 3.61e-01 | 94.0% | 80.3% |
| 1yhpA02 | 2.60.40.1720 | Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 | 0.57 | 46.0 | 3.51e-01 | 100.0% | 38.3% |
| 4xuoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 47.0 | 3.40e-01 | 100.0% | 96.2% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.56 | 46.0 | 3.50e-01 | 98.0% | 43.5% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.55 | 47.0 | 3.63e-01 | 100.0% | 45.9% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 45.0 | 3.68e-01 | 98.0% | 58.7% |
| 1i9gA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.55 | 46.0 | 4.33e-01 | 98.0% | 90.6% |
| 1ji6A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 46.0 | 3.28e-01 | 98.0% | 53.1% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 46.0 | 4.12e-01 | 98.0% | 81.9% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 46.0 | 3.80e-01 | 100.0% | 55.2% |
| 2fb7A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 44.0 | 3.90e-01 | 100.0% | 91.3% |
| 2j4xA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 41.0 | 3.18e-01 | 100.0% | 36.3% |
| 2c9kA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 44.0 | 3.18e-01 | 100.0% | 37.2% |
| 2f1eA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.52 | 44.0 | 3.48e-01 | 100.0% | 47.4% |
| 1xf1A02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.52 | 40.0 | 3.12e-01 | 100.0% | 86.5% |
| 5jzxD02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 43.0 | 3.20e-01 | 100.0% | 64.4% |
| 7vjvA01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.51 | 43.0 | 2.90e-01 | 96.0% | 98.1% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 43.0 | 3.52e-01 | 100.0% | 68.6% |
| 2iciA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 44.0 | 3.18e-01 | 100.0% | 34.2% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.50 | 42.0 | 3.96e-01 | 98.0% | 93.5% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4279289 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.89 | 81.0 | 4.81e-01 | 100.0% | 15.4% |
| 3445642 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.89 | 80.0 | 4.72e-01 | 100.0% | 14.5% |
| 4589818 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.88 | 79.0 | 4.76e-01 | 100.0% | 16.4% |
| 4186650 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.86 | 76.0 | 4.57e-01 | 98.0% | 15.6% |
| 4946214 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.86 | 77.0 | 4.60e-01 | 100.0% | 15.4% |
| 4331124 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.86 | 75.0 | 4.44e-01 | 98.0% | 13.4% |
| 4388717 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.86 | 76.0 | 4.55e-01 | 98.0% | 16.5% |
| 5059693 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.86 | 75.0 | 4.54e-01 | 98.0% | 16.3% |
| 4261933 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.85 | 76.0 | 4.57e-01 | 100.0% | 15.6% |
| 4102294 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.85 | 74.0 | 4.48e-01 | 98.0% | 15.6% |
| 4271590 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.85 | 74.0 | 4.45e-01 | 98.0% | 89.7% |
| 4493828 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.84 | 73.0 | 4.46e-01 | 98.0% | 16.9% |
| 4429482 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.84 | 71.0 | 4.25e-01 | 96.0% | 14.3% |
| 5082153 | 5.2.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel | 0.83 | 73.0 | 4.46e-01 | 100.0% | 88.7% |
| 4609257 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.83 | 72.0 | 4.33e-01 | 98.0% | 15.1% |
| 5053478 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.83 | 72.0 | 4.34e-01 | 98.0% | 15.6% |
| 3959000 | 5.2.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel | 0.83 | 72.0 | 4.75e-01 | 100.0% | 23.9% |
| 4602375 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.83 | 72.0 | 4.28e-01 | 98.0% | 14.9% |
| 5024979 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.82 | 71.0 | 4.30e-01 | 98.0% | 15.8% |
| 4074611 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.82 | 74.0 | 4.45e-01 | 100.0% | 15.9% |
| 3725727 | 3792.1.1.0 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain | 0.82 | 55.0 | 4.52e-01 | 98.0% | 41.2% |
| 4028934 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.81 | 70.0 | 4.28e-01 | 98.0% | 16.6% |
| 4199672 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.79 | 55.0 | 4.42e-01 | 100.0% | 38.9% |
| 3265723 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 51.0 | 5.13e-01 | 100.0% | 74.0% |
| 5051263 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.67 | 56.0 | 3.68e-01 | 98.0% | 74.4% |
| 3426858 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.66 | 57.0 | 4.28e-01 | 100.0% | 98.5% |
| 4971400 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.66 | 59.0 | 3.62e-01 | 100.0% | 21.7% |
| 4932851 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.66 | 59.0 | 4.29e-01 | 100.0% | 44.4% |
| 3319401 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.65 | 56.0 | 4.18e-01 | 100.0% | 100.0% |
| 3673352 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.65 | 55.0 | 4.15e-01 | 100.0% | 96.9% |
| 4979631 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.65 | 58.0 | 4.08e-01 | 100.0% | 38.7% |
| 3888090 | 11.1.1.794 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LIFR_D4 | 0.64 | 49.0 | 4.12e-01 | 100.0% | 47.8% |
| 5023153 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.64 | 56.0 | 4.22e-01 | 100.0% | 57.6% |
| 3321380 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.64 | 54.0 | 3.91e-01 | 100.0% | 97.4% |
| 3643102 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.63 | 54.0 | 3.97e-01 | 100.0% | 100.0% |
| 3815586 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.62 | 52.0 | 4.12e-01 | 100.0% | 99.1% |
| 3704895 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 45.0 | 4.79e-01 | 94.0% | 100.0% |
| 3290050 | 217.1.1.1 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 | 0.61 | 53.0 | 3.63e-01 | 100.0% | 63.8% |
| 3681250 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.61 | 50.0 | 3.77e-01 | 100.0% | 98.6% |
| 4306152 | 148.1.3.203 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 | 0.61 | 53.0 | 3.78e-01 | 100.0% | 65.2% |
| 4499953 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.61 | 53.0 | 5.02e-01 | 98.0% | 81.7% |
| 4451993 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.61 | 52.0 | 4.90e-01 | 96.0% | 80.0% |
| 3603549 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 52.0 | 4.50e-01 | 98.0% | 74.4% |
| 3255514 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.59 | 51.0 | 3.53e-01 | 98.0% | 31.8% |
| 4942778 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 48.0 | 4.88e-01 | 96.0% | 94.0% |
| 3698553 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.59 | 47.0 | 4.61e-01 | 92.0% | 100.0% |
| 3223111 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.58 | 51.0 | 4.08e-01 | 100.0% | 91.0% |
| 3964308 | 1.1.13.37 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 | 0.57 | 48.0 | 3.63e-01 | 100.0% | 66.7% |
| 4220126 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.57 | 48.0 | 4.10e-01 | 98.0% | 70.6% |
| 3214299 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.56 | 46.0 | 4.52e-01 | 100.0% | 85.5% |
| 3318115 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.56 | 50.0 | 2.93e-01 | 100.0% | 12.9% |
| 3881277 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 48.0 | 3.85e-01 | 98.0% | 53.0% |
| 3197747 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 44.0 | 3.64e-01 | 92.0% | 51.6% |
| 4883268 | 304.139.2.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 | 0.54 | 45.0 | 2.79e-01 | 98.0% | 18.2% |
| 3928303 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.53 | 44.0 | 4.09e-01 | 94.0% | 75.4% |
| 5034059 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.53 | 44.0 | 4.12e-01 | 96.0% | 87.7% |
| 4515364 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.52 | 38.0 | 3.07e-01 | 98.0% | 35.7% |
| 3314684 | 10.10.1.5 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › DUF7755 | 0.52 | 41.0 | 3.06e-01 | 98.0% | 47.7% |
| 139162 | 284.1.1.9 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N | 0.51 | 42.0 | 3.96e-01 | 96.0% | 93.4% |
| 4135543 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.50 | 43.0 | 3.33e-01 | 100.0% | 45.4% |