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IMGVR_UViG_3300037400_006419-3300037400-Ga0392372_0042833_509_1105

Arc-Vir

IMGVR_UViG_3300037400_006419-3300037400-Ga0392372_0042833_509_1105

Identity

Kingdom:
archaea

Quality

83.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-134
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 66.0 5.60e-01 100.0% 89.8%
6zq3A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 63.0 5.39e-01 99.2% 89.9%
3ervA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 52.0 4.55e-01 97.7% 88.0%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.60e-01 77.9% 100.0%
1xd3C00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.58 52.0 4.35e-01 98.5% 97.8%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.56 38.0 4.06e-01 96.2% 80.7%
3a7sA00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.55 49.0 4.26e-01 99.2% 98.0%
4mamA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 33.0 3.88e-01 98.5% 98.8%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.52 37.0 3.56e-01 72.5% 87.2%
1o75A02 2.30.30.470 Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B 0.51 38.0 4.11e-01 79.4% 94.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3277753 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.73 68.0 5.39e-01 100.0% 94.1%
5019689 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.72 57.0 5.26e-01 98.5% 64.5%
3331216 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.71 60.0 5.77e-01 90.8% 94.7%
4978305 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.71 66.0 4.98e-01 100.0% 85.8%
3419533 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 65.0 4.93e-01 98.5% 50.9%
3422428 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 65.0 5.34e-01 100.0% 62.2%
3452899 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 65.0 5.00e-01 100.0% 54.2%
3251612 219.1.1.94 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › ACTMAP-like_C 0.68 63.0 5.14e-01 99.2% 60.5%
3806552 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 61.0 5.59e-01 99.2% 97.6%
3792183 219.1.1.94 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › ACTMAP-like_C 0.65 60.0 4.96e-01 100.0% 65.7%
3824556 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.65 59.0 4.94e-01 100.0% 67.0%
5033672 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 57.0 5.01e-01 98.5% 75.9%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 32.0 3.86e-01 71.0% 78.8%
3592306 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 54.0 4.48e-01 98.5% 98.7%
3699158 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.59 53.0 4.39e-01 98.5% 96.6%
4974745 219.1.1.153 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.59 54.0 4.74e-01 99.2% 91.6%
3706361 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.30e-01 73.3% 90.4%
3842361 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.58 41.0 4.61e-01 76.3% 98.9%
3520211 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.58 52.0 4.23e-01 98.5% 97.1%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 33.0 4.00e-01 73.3% 92.5%
3449268 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 31.0 3.74e-01 73.3% 82.4%
5046961 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 44.0 3.74e-01 87.8% 94.4%
3806983 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.53 40.0 3.24e-01 78.6% 92.9%
3583317 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 44.0 4.07e-01 91.6% 100.0%
5000263 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 39.0 3.47e-01 80.2% 83.6%
4939479 206.1.3.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.51 34.0 3.26e-01 99.2% 57.3%
3817655 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.51 38.0 3.95e-01 81.7% 96.8%
3811267 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.50 37.0 3.01e-01 76.3% 80.8%
D2 high residues 137-197
PDB
Domain cluster: rep: IMGVR_UViG_3300012979_002452-3300012979-Ga0123348_100148422__D225-260_262-284