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IMGVR_UViG_3300037400_006527-3300037400-Ga0392372_0022123_5395_5682
Arc-VirIMGVR_UViG_3300037400_006527-3300037400-Ga0392372_0022123_5395_5682
Identity
- Kingdom:
- archaea
Quality
89.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-95
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jvoA00 | 1.10.3230.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein | 0.72 | 63.0 | 6.00e-01 | 100.0% | 82.3% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.67 | 43.0 | 4.48e-01 | 70.2% | 71.1% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.65 | 46.0 | 4.17e-01 | 73.8% | 55.5% |
| 1gcvB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 50.0 | 4.34e-01 | 84.5% | 85.3% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.65 | 46.0 | 4.06e-01 | 73.8% | 51.7% |
| 1u00A02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 40.0 | 3.90e-01 | 70.2% | 55.2% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 50.0 | 4.25e-01 | 85.7% | 85.1% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 49.0 | 5.10e-01 | 97.6% | 91.0% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 49.0 | 4.12e-01 | 85.7% | 85.6% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 49.0 | 5.03e-01 | 97.6% | 88.9% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 49.0 | 4.17e-01 | 86.9% | 85.8% |
| 1xwjA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.61 | 43.0 | 3.75e-01 | 73.8% | 55.4% |
| 4akgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.60 | 53.0 | 4.38e-01 | 100.0% | 88.5% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 48.0 | 3.99e-01 | 88.1% | 78.0% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 47.0 | 4.10e-01 | 89.3% | 87.8% |
| 1cpyA02 | 1.10.287.410 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 39.0 | 4.19e-01 | 73.8% | 83.3% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 44.0 | 3.75e-01 | 85.7% | 79.2% |
| 2yleA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.57 | 45.0 | 3.57e-01 | 84.5% | 93.6% |
| 2uvaJ10 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.56 | 45.0 | 3.63e-01 | 89.3% | 65.9% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.55 | 47.0 | 3.07e-01 | 100.0% | 90.4% |
| 1mijA00 | 1.10.10.500 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeo-prospero domain | 0.54 | 39.0 | 3.40e-01 | 78.6% | 48.2% |
| 6wfqC01 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.53 | 42.0 | 3.61e-01 | 89.3% | 51.4% |
| 3w0oA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.53 | 39.0 | 2.94e-01 | 79.8% | 58.2% |
| 4u04A02 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.53 | 40.0 | 2.95e-01 | 81.0% | 99.6% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 41.0 | 3.55e-01 | 84.5% | 81.5% |
| 3fhdA01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.52 | 39.0 | 3.44e-01 | 82.1% | 55.9% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.52 | 42.0 | 3.71e-01 | 88.1% | 69.9% |
| 1yfmA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.51 | 43.0 | 3.80e-01 | 94.0% | 69.0% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.51 | 45.0 | 3.71e-01 | 97.6% | 57.1% |
| 4rflA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.51 | 42.0 | 3.29e-01 | 95.2% | 95.5% |
| 6d5xA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.50 | 44.0 | 3.69e-01 | 100.0% | 82.8% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.50 | 43.0 | 3.87e-01 | 97.6% | 82.8% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.50 | 39.0 | 3.96e-01 | 84.5% | 92.7% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079675 | 4275.1.1.2 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_Mu_Gp36 | 0.82 | 76.0 | 7.09e-01 | 100.0% | 83.0% |
| 3937415 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.74 | 60.0 | 4.79e-01 | 88.1% | 79.9% |
| 5060571 | 1076.1.1.0 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related | 0.70 | 54.0 | 3.98e-01 | 83.3% | 64.9% |
| 3603712 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.67 | 45.0 | 4.21e-01 | 70.2% | 57.0% |
| 4111697 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.66 | 44.0 | 3.95e-01 | 70.2% | 49.6% |
| 4541059 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.65 | 50.0 | 3.79e-01 | 79.8% | 66.8% |
| 3903076 | 632.11.1.9 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › PIG-S | 0.65 | 47.0 | 3.94e-01 | 75.0% | 89.6% |
| 3818391 | 109.46.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › TPR1-like_2nd | 0.64 | 44.0 | 3.86e-01 | 71.4% | 48.8% |
| 3761289 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.64 | 49.0 | 4.17e-01 | 83.3% | 58.6% |
| 3612667 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.64 | 49.0 | 3.60e-01 | 84.5% | 61.3% |
| 3819669 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.61 | 43.0 | 2.93e-01 | 75.0% | 67.8% |
| 4240705 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.61 | 42.0 | 4.22e-01 | 70.2% | 69.4% |
| 3622690 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.60 | 41.0 | 4.07e-01 | 70.2% | 71.1% |
| 3675343 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.59 | 51.0 | 4.32e-01 | 100.0% | 82.0% |
| 4985991 | 206.1.2.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt | 0.59 | 46.0 | 3.09e-01 | 84.5% | 76.3% |
| 3467149 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.58 | 49.0 | 4.33e-01 | 94.0% | 90.4% |
| 4558116 | 1046.1.1.1 ↗ | alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8 | 0.58 | 52.0 | 4.33e-01 | 100.0% | 90.5% |
| 3968973 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.56 | 46.0 | 4.03e-01 | 91.7% | 60.0% |
| 4107589 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.56 | 43.0 | 3.95e-01 | 84.5% | 62.6% |
| 5014221 | 1076.1.1.0 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related | 0.55 | 48.0 | 3.59e-01 | 97.6% | 79.1% |
| 4937297 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.54 | 37.0 | 3.55e-01 | 70.2% | 61.0% |
| 4937380 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.54 | 38.0 | 4.00e-01 | 73.8% | 86.7% |
| 3737933 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.53 | 40.0 | 3.19e-01 | 79.8% | 85.9% |
| 3381284 | 5059.1.1.33 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, SLC35F | 0.53 | 39.0 | 2.72e-01 | 79.8% | 61.2% |
| 3621853 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 37.0 | 3.01e-01 | 83.3% | 36.5% |
| 4024143 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.53 | 42.0 | 3.08e-01 | 84.5% | 38.6% |
| 4263262 | 109.4.1.1621 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27751 | 0.52 | 42.0 | 2.75e-01 | 90.5% | 22.8% |
| 4246492 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.52 | 40.0 | 3.88e-01 | 82.1% | 74.7% |
| 3393571 | 5059.1.1.4 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp | 0.52 | 40.0 | 2.79e-01 | 84.5% | 82.5% |
| 3269956 | 1076.1.1.2 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Aph-1 | 0.51 | 45.0 | 3.30e-01 | 96.4% | 72.9% |