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IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_111014_111325

Arc-Vir

IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_111014_111325

Identity

Kingdom:
archaea

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-95
PDB
Domain cluster: representative
CATH (67)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.69 61.0 4.47e-01 100.0% 69.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 54.0 5.06e-01 90.4% 89.4%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 4.90e-01 90.4% 87.9%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 49.0 3.83e-01 82.7% 72.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 4.71e-01 94.2% 83.1%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.64 55.0 4.35e-01 98.1% 94.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 4.96e-01 94.2% 91.3%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 55.0 4.47e-01 100.0% 89.4%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.64 47.0 4.10e-01 78.8% 97.5%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 54.0 4.45e-01 100.0% 87.1%
1cyyA02 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.63 46.0 3.51e-01 78.8% 91.2%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.62 53.0 4.45e-01 100.0% 95.7%
3q34A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.62 45.0 3.17e-01 78.8% 77.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.48e-01 86.5% 78.8%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 53.0 4.28e-01 100.0% 88.7%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 50.0 3.57e-01 100.0% 47.9%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.75e-01 82.7% 81.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.63e-01 80.8% 95.8%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.56e-01 82.7% 68.9%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.61 48.0 3.11e-01 88.5% 38.2%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 46.0 3.48e-01 82.7% 48.8%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 49.0 3.51e-01 88.5% 47.4%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.52e-01 84.6% 66.1%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 48.0 3.51e-01 88.5% 42.7%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 44.0 3.49e-01 82.7% 72.3%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.60 46.0 3.79e-01 90.4% 92.5%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.59 45.0 4.30e-01 88.5% 98.4%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 48.0 3.58e-01 96.2% 98.6%
1vf7F01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.59 48.0 4.05e-01 100.0% 100.0%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 43.0 3.08e-01 82.7% 33.9%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.58e-01 78.8% 81.3%
3e4wA02 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.58 41.0 2.84e-01 78.8% 87.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.21e-01 82.7% 88.1%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.58e-01 90.4% 63.2%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.14e-01 80.8% 87.5%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.53e-01 78.8% 84.3%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 44.0 4.08e-01 90.4% 97.2%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 42.0 3.25e-01 82.7% 73.4%
7f79A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 40.0 2.93e-01 80.8% 56.0%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 2.99e-01 88.5% 38.7%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.55 47.0 3.69e-01 100.0% 70.9%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 3.77e-01 100.0% 65.4%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 43.0 3.27e-01 90.4% 56.3%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 44.0 3.26e-01 98.1% 64.2%
5cmlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 39.0 2.63e-01 78.8% 35.8%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 44.0 3.05e-01 94.2% 44.8%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 39.0 2.81e-01 82.7% 58.5%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.63e-01 88.5% 71.3%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.58e-01 100.0% 58.9%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 46.0 3.34e-01 100.0% 35.6%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.54 42.0 4.10e-01 94.2% 90.2%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 42.0 3.16e-01 90.4% 95.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.11e-01 100.0% 75.3%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.93e-01 96.2% 77.5%
3lwkA02 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.53 44.0 3.80e-01 100.0% 71.4%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 46.0 3.36e-01 100.0% 36.1%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 3.71e-01 100.0% 63.6%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 40.0 3.16e-01 88.5% 79.8%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 40.0 2.85e-01 92.3% 84.2%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 3.04e-01 82.7% 85.7%
2m4vA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.52 37.0 3.30e-01 78.8% 51.2%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 36.0 2.57e-01 76.9% 55.6%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.12e-01 100.0% 38.8%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 41.0 3.35e-01 100.0% 77.4%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.50 35.0 2.87e-01 78.8% 94.1%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.62e-01 94.2% 77.5%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.50 36.0 3.32e-01 76.9% 95.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3417047 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.69 58.0 5.43e-01 94.2% 93.8%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.67 57.0 5.00e-01 98.1% 83.7%
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.66 53.0 4.84e-01 90.4% 91.4%
3593222 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 4.66e-01 92.3% 97.6%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.51e-01 96.2% 71.6%
4953373 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.65 50.0 3.72e-01 84.6% 45.9%
4423739 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 55.0 4.58e-01 100.0% 84.2%
3901160 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.64 48.0 3.31e-01 82.7% 44.3%
4217174 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 53.0 4.95e-01 100.0% 91.4%
3260650 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 48.0 3.76e-01 82.7% 67.3%
4246480 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 50.0 4.14e-01 88.5% 77.9%
3254541 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 48.0 3.76e-01 82.7% 74.5%
4026674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.62 51.0 4.60e-01 100.0% 90.0%
3938106 9.15.1.0 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 0.62 51.0 3.88e-01 100.0% 70.3%
3512272 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 52.0 4.72e-01 100.0% 93.3%
1567470 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 51.0 4.25e-01 96.2% 89.7%
4991439 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 51.0 4.52e-01 96.2% 97.5%
3972951 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.61 52.0 4.71e-01 100.0% 96.0%
5046794 207.1.1.24 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.61 42.0 2.52e-01 78.8% 9.6%
3969508 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 52.0 3.69e-01 100.0% 36.5%
4947671 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 51.0 4.46e-01 96.2% 100.0%
3947980 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.60 45.0 3.63e-01 80.8% 47.0%
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 54.0 4.49e-01 100.0% 64.4%
5081809 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 49.0 4.63e-01 96.2% 96.9%
2559791 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.60 50.0 4.22e-01 98.1% 98.9%
3190308 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 50.0 3.61e-01 100.0% 85.9%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.60 47.0 3.16e-01 88.5% 24.8%
3858885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.36e-01 80.8% 96.4%
3447802 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 43.0 3.68e-01 80.8% 63.3%
4347919 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 49.0 4.23e-01 100.0% 83.3%
2323826 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.59 51.0 4.49e-01 100.0% 93.6%
3990623 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 43.0 3.30e-01 78.8% 65.8%
3186280 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.58 47.0 3.27e-01 98.1% 51.6%
None — 0.58 48.0 3.01e-01 100.0% 46.0%
3854230 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.58 49.0 3.04e-01 100.0% 48.2%
5040690 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 48.0 4.07e-01 100.0% 75.8%
3237970 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 3.43e-01 88.5% 64.8%
3594241 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.17e-01 82.7% 66.7%
4067132 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.61e-01 92.3% 80.9%
4106342 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.56 40.0 3.43e-01 78.8% 84.4%
138887 1.1.5.32 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR 0.54 42.0 3.36e-01 90.4% 58.1%
150973 4967.1.1.5 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_3 0.54 41.0 2.82e-01 88.5% 66.7%
4646733 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.54 43.0 3.65e-01 96.2% 91.0%
4089092 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 43.0 2.94e-01 100.0% 68.5%
3283665 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 38.0 2.76e-01 78.8% 29.7%
4015954 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 43.0 2.85e-01 94.2% 45.1%
3570575 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.53 41.0 2.76e-01 84.6% 57.7%
3968836 11.1.1.1153 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2169 0.52 44.0 3.40e-01 100.0% 87.2%
3952469 3794.1.1.2 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.51 40.0 3.17e-01 94.2% 83.1%
3017662 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.51 35.0 2.71e-01 73.1% 89.0%