←Back to structures

IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_123573_123770

Arc-Vir

IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_123573_123770

Identity

Kingdom:
archaea

Quality

86.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 40.0 2.74e-01 71.7% 76.8%
3floB00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.58 45.0 3.16e-01 83.3% 38.3%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 3.17e-01 90.0% 93.2%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.57 47.0 3.25e-01 98.3% 45.0%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 48.0 3.06e-01 96.7% 36.0%
5d0iB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 25.0 2.75e-01 85.0% 45.1%
3vwaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 41.0 3.13e-01 81.7% 42.7%
1dl2A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 41.0 2.41e-01 80.0% 34.9%
1qhlA00 3.40.1140.10 Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › 0.53 45.0 3.19e-01 96.7% 67.5%
7w3rB01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 45.0 2.89e-01 100.0% 30.1%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 44.0 2.99e-01 100.0% 52.1%
7lzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.12e-01 86.7% 48.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3319227 1021.1.1.2 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.72 44.0 4.22e-01 100.0% 54.3%
4830953 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.66 40.0 2.87e-01 100.0% 21.4%
4024025 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.64 35.0 3.34e-01 100.0% 45.7%
4466609 7101.1.1.1 ↗ extended segments › Prp8-binding region of SLU7 › Prp8-binding region of SLU7 › Prp8-binding region of SLU7 › Slu7 0.63 43.0 3.58e-01 93.3% 42.0%
5059205 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 27.0 3.20e-01 88.3% 57.5%
3204729 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 50.0 2.96e-01 98.3% 28.3%
3218874 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 48.0 2.83e-01 100.0% 19.1%
4467359 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 45.0 3.32e-01 93.3% 60.0%
3550627 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 46.0 2.82e-01 96.7% 24.5%
3892736 103.1.1.67 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UPF0515 0.54 25.0 2.92e-01 88.3% 52.3%
5024287 103.5.1.11 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF2067 0.54 49.0 4.52e-01 100.0% 90.7%
3730941 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 47.0 2.90e-01 98.3% 34.0%
3389033 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.54 32.0 3.66e-01 75.0% 85.0%
4478999 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 47.0 3.41e-01 98.3% 56.6%
None — 0.54 43.0 3.00e-01 91.7% 95.3%
3690322 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 44.0 2.77e-01 100.0% 30.6%
4241167 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.52 44.0 3.24e-01 96.7% 46.5%
4329890 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 44.0 3.37e-01 100.0% 49.3%
3657165 376.1.3.53 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_VAL1_N 0.52 30.0 3.04e-01 75.0% 50.8%
3221205 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.51 43.0 2.75e-01 100.0% 32.7%
4507638 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.50 41.0 3.07e-01 93.3% 53.3%