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IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_131585_131764

Arc-Vir

IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_131585_131764

Quality

74.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-59
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ilxA02 1.10.287.2170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.91 59.0 6.71e-01 71.2% 88.6%
3pyoY00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.89 61.0 6.02e-01 71.2% 74.2%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.85 59.0 6.51e-01 83.1% 87.8%
4aurA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.81 56.0 3.53e-01 71.2% 16.6%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.81 61.0 6.71e-01 88.1% 95.9%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 61.0 5.72e-01 89.8% 67.6%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.79 66.0 4.40e-01 88.1% 29.5%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.79 60.0 5.37e-01 91.5% 59.3%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 64.0 5.91e-01 88.1% 71.6%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 64.0 5.66e-01 88.1% 64.2%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.76 67.0 4.57e-01 94.9% 94.7%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 62.0 6.24e-01 91.5% 88.1%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.75 64.0 5.02e-01 89.8% 65.2%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 63.0 5.86e-01 89.8% 90.4%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 63.0 6.40e-01 89.8% 98.3%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 56.0 5.15e-01 88.1% 63.5%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.73 60.0 6.03e-01 88.1% 93.3%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 59.0 5.33e-01 86.4% 66.7%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.72 65.0 5.18e-01 100.0% 70.4%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.72 55.0 5.15e-01 88.1% 67.1%
3rx6A00 1.20.58.1090 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer 0.72 65.0 4.50e-01 100.0% 81.8%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.72 64.0 5.17e-01 100.0% 72.3%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.71 62.0 3.85e-01 100.0% 80.1%
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.70 58.0 4.46e-01 93.2% 91.9%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.70 60.0 4.71e-01 91.5% 49.6%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.69 57.0 5.57e-01 89.8% 85.9%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.69 53.0 4.79e-01 94.9% 62.0%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.68 62.0 4.73e-01 100.0% 73.4%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.68 51.0 5.10e-01 89.8% 80.3%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.66 52.0 5.26e-01 88.1% 100.0%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 48.0 4.07e-01 88.1% 45.3%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 55.0 5.19e-01 98.3% 80.8%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.65 56.0 5.18e-01 96.6% 83.8%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 55.0 3.59e-01 100.0% 26.5%
1yfmA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.63 42.0 3.42e-01 71.2% 34.1%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 51.0 3.57e-01 91.5% 29.4%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.63 51.0 4.35e-01 93.2% 75.2%
2g2dA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.63 49.0 3.69e-01 89.8% 76.2%
8h6rA01 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.62 52.0 4.74e-01 98.3% 71.8%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.62 46.0 4.90e-01 98.3% 98.0%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.62 49.0 4.23e-01 91.5% 54.5%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.62 53.0 4.69e-01 100.0% 79.8%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.61 51.0 4.26e-01 100.0% 63.5%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 48.0 4.13e-01 94.9% 88.9%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 46.0 4.60e-01 91.5% 83.9%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 45.0 4.48e-01 86.4% 79.4%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 44.0 3.31e-01 88.1% 30.2%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 45.0 4.57e-01 88.1% 98.3%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.59 44.0 4.39e-01 86.4% 95.3%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 47.0 4.03e-01 100.0% 82.1%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.57 43.0 4.35e-01 91.5% 86.9%
1vibA00 1.10.287.120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like 0.56 40.0 4.14e-01 88.1% 81.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222543 3652.1.1.0 alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 0.91 61.0 6.15e-01 71.2% 68.3%
3928281 3652.1.1.2 alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 › STAR_dimer 0.87 62.0 7.03e-01 83.1% 97.8%
3232471 3652.1.1.2 alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 › STAR_dimer 0.87 61.0 6.07e-01 72.9% 75.0%
3743365 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.86 64.0 3.59e-01 88.1% 7.7%
3475201 3652.1.1.2 alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 › STAR_dimer 0.85 64.0 6.45e-01 88.1% 78.3%
3356293 192.4.1.22 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › PF26575 0.83 64.0 6.43e-01 88.1% 80.0%
4089827 192.1.1.34 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF444 0.83 63.0 5.73e-01 88.1% 62.7%
3890044 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.82 64.0 6.06e-01 89.8% 70.6%
4178100 604.1.1.241 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27734 0.82 64.0 4.03e-01 86.4% 18.8%
3509997 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.81 62.0 4.13e-01 88.1% 23.4%
3251093 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.79 62.0 4.87e-01 88.1% 42.6%
3620970 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 68.0 4.37e-01 100.0% 22.0%
3626229 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.79 64.0 5.60e-01 86.4% 61.2%
4013967 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.78 62.0 3.59e-01 86.4% 11.3%
3970799 602.3.1.0 alpha arrays › L-aspartase middle domain-like › TssK neck domain › TssK neck domain 0.78 58.0 4.52e-01 91.5% 38.3%
3505608 192.29.1.1 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.78 62.0 5.64e-01 88.1% 65.3%
1002194 192.23.1.1 alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Rop-like 0.78 60.0 5.63e-01 91.5% 69.0%
4508314 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.77 64.0 6.27e-01 89.8% 82.5%
3888264 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.77 61.0 3.74e-01 88.1% 16.3%
3906813 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.77 60.0 3.66e-01 88.1% 14.8%
3639993 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 62.0 4.84e-01 100.0% 42.9%
3406588 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.76 70.0 4.81e-01 100.0% 60.6%
3443484 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.76 70.0 6.44e-01 100.0% 85.1%
3611166 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 63.0 4.24e-01 89.8% 42.0%
5048862 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.75 58.0 3.50e-01 88.1% 13.1%
3695842 109.4.1.1407 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA 0.75 64.0 3.43e-01 91.5% 7.3%
3922393 601.39.1.0 alpha bundles › Four-helical up-and-down bundle › Enhancer of filamentation 1 › Enhancer of filamentation 1 0.74 66.0 4.94e-01 96.6% 98.5%
4070346 192.8.1.343 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Val_tRNA-synt_C 0.74 58.0 5.61e-01 88.1% 75.4%
3499450 109.4.1.1551 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAI16-like, DUF5917 0.74 68.0 3.83e-01 100.0% 11.1%
4147837 192.1.1.41 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › Val_tRNA-synt_C 0.74 57.0 5.56e-01 89.8% 75.4%
3312166 109.4.1.777 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 58.0 3.81e-01 94.9% 22.4%
3778402 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.72 54.0 3.31e-01 88.1% 13.0%
3622492 109.4.1.1344 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28737 0.72 66.0 3.91e-01 100.0% 24.9%
3934022 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.71 64.0 5.29e-01 98.3% 76.0%
3610706 3602.1.1.0 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.70 58.0 5.25e-01 91.5% 72.5%
3893139 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.68 53.0 4.29e-01 86.4% 99.1%
3254275 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 58.0 4.24e-01 100.0% 39.4%
3428894 604.5.1.39 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF26581 0.67 61.0 4.55e-01 100.0% 78.6%
3698361 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.67 59.0 5.02e-01 98.3% 86.3%
4951649 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.66 56.0 4.43e-01 100.0% 76.2%
3542655 385.1.1.20 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › AMH_N 0.65 48.0 4.19e-01 89.8% 52.2%
3273757 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.64 55.0 4.50e-01 100.0% 85.1%
3503307 1203.1.2.1 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.61 47.0 3.55e-01 91.5% 33.1%
3928221 4.1.1.310 beta barrels › SH3 › SH3 › SH3 › PF26050 0.57 44.0 3.52e-01 91.5% 39.3%