Back to structures

IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_175916_176176

Arc-Vir

IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_175916_176176

Quality

77.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-86
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20037.5 best DUF6440 29.3 8.00e-07 88.7% 67.9%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 39.0 4.39e-01 71.7% 79.5%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 57.0 3.59e-01 100.0% 36.3%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 57.0 3.53e-01 100.0% 30.2%
3hjhA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.65 50.0 4.30e-01 84.9% 88.4%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.64 53.0 4.66e-01 98.1% 61.3%
3kreA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 52.0 4.29e-01 90.6% 82.5%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 46.0 3.49e-01 92.5% 32.3%
5mw8A01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.64 52.0 4.10e-01 92.5% 94.7%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 55.0 3.30e-01 100.0% 19.6%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 55.0 3.38e-01 100.0% 29.7%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 54.0 4.04e-01 100.0% 50.7%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 54.0 4.07e-01 100.0% 56.0%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 51.0 3.30e-01 100.0% 18.6%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 52.0 3.94e-01 98.1% 42.1%
2id0A04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 50.0 4.23e-01 86.8% 85.1%
2eeiA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 47.0 3.88e-01 86.8% 51.9%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.62 48.0 3.74e-01 84.9% 38.8%
2gqrA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 52.0 4.25e-01 96.2% 82.0%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 53.0 3.80e-01 100.0% 44.4%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.61 42.0 3.10e-01 83.0% 24.8%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 3.97e-01 100.0% 53.1%
4c26A00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.61 45.0 4.23e-01 84.9% 65.2%
3s2kB01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 52.0 3.28e-01 100.0% 19.6%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 39.0 3.82e-01 84.9% 58.1%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 48.0 4.02e-01 86.8% 70.8%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 53.0 3.28e-01 100.0% 40.9%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.81e-01 100.0% 41.9%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.60 49.0 4.44e-01 94.3% 77.0%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 3.78e-01 98.1% 39.0%
1lwjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 46.0 4.73e-01 84.9% 100.0%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 3.95e-01 100.0% 43.4%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.57 44.0 2.82e-01 86.8% 81.9%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.57 48.0 3.56e-01 98.1% 64.9%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.57 46.0 3.38e-01 100.0% 91.0%
1vw5A00 3.30.70.1420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 0.56 46.0 3.49e-01 100.0% 100.0%
7vt9A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 43.0 3.95e-01 84.9% 100.0%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 45.0 3.12e-01 94.3% 59.8%
1x1iA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.55 40.0 3.28e-01 83.0% 96.6%
4aeeA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 43.0 4.01e-01 86.8% 92.5%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.55 41.0 2.89e-01 84.9% 45.7%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.53 39.0 3.18e-01 84.9% 95.7%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 38.0 2.66e-01 84.9% 60.2%
4gniB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 39.0 2.94e-01 86.8% 69.9%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 43.0 3.44e-01 92.5% 64.5%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 44.0 3.74e-01 100.0% 75.5%
2h1qA01 3.30.390.100 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 43.0 3.38e-01 100.0% 73.4%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 40.0 3.60e-01 88.7% 98.8%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.37e-01 94.3% 79.4%
1ewqA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.51 38.0 3.07e-01 86.8% 93.2%
1rwhA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.50 42.0 3.37e-01 96.2% 64.0%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 34.0 2.99e-01 84.9% 44.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2985816 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.74 56.0 4.11e-01 83.0% 36.4%
5039412 5.1.4.665 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_2 0.72 62.0 3.69e-01 98.1% 27.7%
None 0.72 51.0 3.10e-01 88.7% 12.7%
5052949 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 53.0 4.08e-01 98.1% 36.0%
3738404 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.68 48.0 3.35e-01 100.0% 22.2%
4951171 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.68 49.0 4.54e-01 88.7% 60.0%
3992505 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.67 50.0 3.24e-01 98.1% 16.9%
3727614 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 59.0 3.76e-01 100.0% 44.6%
4649120 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.67 58.0 3.60e-01 98.1% 41.1%
4340138 206.1.2.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt 0.66 49.0 3.25e-01 83.0% 75.1%
3495285 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.66 51.0 3.71e-01 86.8% 30.0%
4082107 7089.1.1.3 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › MmoD 0.66 56.0 5.08e-01 100.0% 71.4%
3496279 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.65 57.0 3.32e-01 100.0% 42.9%
3325704 5.1.4.222 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 0.65 57.0 3.47e-01 100.0% 22.5%
4964393 236.3.1.1 beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.65 58.0 5.13e-01 98.1% 100.0%
3973152 5.1.5.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Cytochrom_D1 0.65 55.0 3.31e-01 100.0% 24.9%
4187379 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 50.0 3.87e-01 96.2% 38.3%
3458155 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.63 54.0 3.38e-01 100.0% 23.9%
3954845 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.63 55.0 3.38e-01 100.0% 25.4%
3168104 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.63 54.0 3.03e-01 100.0% 21.1%
3996256 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.63 44.0 4.11e-01 88.7% 57.1%
3936038 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.63 51.0 4.16e-01 98.1% 66.4%
3277308 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 55.0 3.77e-01 100.0% 29.9%
2075069 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.63 54.0 3.21e-01 100.0% 28.5%
4072406 206.1.2.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt 0.63 55.0 3.60e-01 100.0% 36.2%
4427264 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.63 55.0 3.21e-01 100.0% 30.1%
3619880 5.1.3.140 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL, DUF5128 0.62 54.0 3.35e-01 100.0% 38.7%
4964031 7089.1.1.7 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF7543 0.62 53.0 4.92e-01 100.0% 82.9%
3423257 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.62 54.0 3.25e-01 100.0% 36.1%
4029170 77.2.1.0 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.62 48.0 3.98e-01 88.7% 47.0%
3371877 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 54.0 3.21e-01 100.0% 26.3%
3844453 5.1.3.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.61 53.0 3.41e-01 100.0% 35.2%
3656988 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 53.0 3.19e-01 100.0% 34.4%
4947529 206.1.2.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt 0.61 53.0 3.40e-01 98.1% 33.6%
3394752 5.1.5.41 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2 0.61 51.0 3.14e-01 100.0% 26.7%
1034013 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.60 50.0 4.47e-01 96.2% 74.4%
1147818 216.1.1.8 a+b two layers › UBC-like › UBC-like › UBC-like › Knl1_RWD_C 0.60 48.0 3.76e-01 88.7% 45.3%
4405609 506.2.1.2 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.60 50.0 4.28e-01 96.2% 82.2%
3939969 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 51.0 3.20e-01 100.0% 24.3%
3234136 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 50.0 3.78e-01 100.0% 49.6%
4861411 5.1.4.58 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF5074 0.56 45.0 2.92e-01 100.0% 37.3%
3936037 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 4.11e-01 100.0% 81.1%
3171382 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.56 47.0 4.07e-01 100.0% 73.3%
3276309 319.1.1.5 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.55 37.0 3.03e-01 86.8% 34.2%
3499122 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.54 42.0 2.83e-01 88.7% 20.9%
5012898 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 34.0 3.29e-01 71.7% 56.7%
4854906 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.53 41.0 3.46e-01 90.6% 49.0%
2516379 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 42.0 3.51e-01 94.3% 84.0%
3617801 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 41.0 2.64e-01 98.1% 17.4%
3660563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.05e-01 100.0% 98.5%
2003 12.2.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C 0.50 42.0 3.38e-01 96.2% 64.6%