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IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_177663_178238

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_177663_178238 ↗
Kingdom:: archaea

Quality

82.7 mean pLDDT

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-103

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dirA01	3.30.2300.10	Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily	0.59	37.0	3.88e-01	82.3%	70.1%
7jv7B01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.57	44.0	3.81e-01	81.2%	71.9%
1ghhA00	3.30.910.10	Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like	0.54	36.0	3.92e-01	89.6%	81.5%
3bt7A02	2.40.50.1070	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.53	43.0	3.79e-01	94.8%	58.6%
1nvmA02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.52	32.0	3.84e-01	91.7%	95.3%
5suhB01	3.30.70.1710	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain	0.50	34.0	3.39e-01	85.4%	66.7%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4526118	4143.1.1.5 ↗	a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › RLMM_N	0.64	40.0	4.05e-01	82.3%	63.2%
3599683	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.56	39.0	2.76e-01	74.0%	46.3%
3384902	304.8.1.79 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALE2_N	0.55	41.0	3.84e-01	78.1%	84.3%
3891889	11.1.1.633 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA0319	0.54	41.0	3.59e-01	81.2%	62.8%
3609518	101.1.1.491 ↗	alpha arrays › HTH › HTH › Three-helical HTH › FAZ1_cons	0.54	39.0	3.89e-01	76.0%	83.0%
3338139	11.1.1.792 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ALE2_N	0.53	39.0	3.66e-01	76.0%	72.2%
3269957	206.1.1.20 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr	0.53	39.0	2.75e-01	78.1%	43.4%
3477834	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.53	39.0	2.76e-01	78.1%	43.5%
3931732	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.53	38.0	2.63e-01	77.1%	39.6%
3512337	304.109.1.0 ↗	a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e	0.53	36.0	4.09e-01	72.9%	97.1%
3622592	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.52	38.0	2.69e-01	77.1%	42.8%
3235643	304.166.1.1 ↗	a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › DAG1	0.52	40.0	3.84e-01	83.3%	84.3%
3206553	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.52	36.0	2.63e-01	71.9%	27.5%
3342381	304.166.1.4 ↗	a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › ALE2_N	0.52	37.0	3.60e-01	76.0%	76.4%
3718921	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.51	37.0	2.67e-01	78.1%	45.1%
5031798	327.10.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related	0.51	39.0	3.90e-01	97.9%	79.0%

D2 medium residues 104-191

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5mmiG01	3.90.930.12	Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6	0.62	33.0	3.44e-01	97.7%	54.8%
4am6A02	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.55	34.0	2.93e-01	96.6%	35.5%
4abyD00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	37.0	2.58e-01	73.9%	85.5%
4wxaA00	3.30.310.50	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain	0.52	32.0	3.27e-01	98.9%	63.1%
4ctaA02	3.30.70.2860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	29.0	3.09e-01	96.6%	61.3%
6le1A01	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.51	29.0	3.21e-01	96.6%	70.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3905886	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.53	41.0	4.13e-01	84.1%	98.9%
4999286	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.52	31.0	2.51e-01	80.7%	28.9%
4963143	2008.1.1.228 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5787	0.51	43.0	3.54e-01	100.0%	80.6%