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IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_214492_215073
Arc-VirIMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_214492_215073
Identity
- Kingdom:
- archaea
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-54
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6e5bN00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.78 | 63.0 | 4.20e-01 | 92.3% | 23.1% |
| 1l0oC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 53.0 | 5.22e-01 | 73.1% | 66.7% |
| 7lxuE01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.76 | 64.0 | 4.20e-01 | 94.2% | 23.4% |
| 1rypL00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.75 | 61.0 | 4.03e-01 | 90.4% | 22.6% |
| 6muwK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.73 | 60.0 | 4.06e-01 | 94.2% | 24.6% |
| 1ryp100 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.73 | 60.0 | 3.96e-01 | 94.2% | 21.6% |
| 1rypC00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.73 | 61.0 | 3.91e-01 | 94.2% | 20.5% |
| 1fnnA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.73 | 52.0 | 4.21e-01 | 76.9% | 83.2% |
| 3b0bC02 | 6.10.130.30 | Special › Helix non-globular › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.72 | 54.0 | 5.74e-01 | 82.7% | 100.0% |
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.71 | 59.0 | 3.98e-01 | 94.2% | 24.7% |
| 2p11A02 | 1.10.286.50 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.70 | 50.0 | 4.50e-01 | 82.7% | 54.1% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 5.27e-01 | 88.5% | 86.2% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.65 | 48.0 | 4.06e-01 | 80.8% | 78.4% |
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.64 | 53.0 | 4.55e-01 | 98.1% | 67.0% |
| 2f48A03 | 1.10.10.480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 | 0.64 | 48.0 | 4.22e-01 | 84.6% | 56.0% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 47.0 | 4.49e-01 | 82.7% | 72.6% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 55.0 | 3.48e-01 | 100.0% | 90.5% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 46.0 | 4.16e-01 | 84.6% | 57.3% |
| 4mlmA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.59 | 49.0 | 3.42e-01 | 98.1% | 99.5% |
| 2fh5A01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 46.0 | 3.65e-01 | 100.0% | 40.2% |
| 1af7A01 | 1.10.155.10 | Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0.56 | 43.0 | 3.85e-01 | 88.5% | 60.0% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.55 | 44.0 | 3.94e-01 | 92.3% | 61.0% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 41.0 | 2.47e-01 | 94.2% | 46.3% |
| 3cmnA01 | 1.20.150.30 | Mainly Alpha › Up-down Bundle › Lysin › Zincin-like metallopeptidase, N-terminal domain | 0.54 | 43.0 | 3.54e-01 | 100.0% | 47.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3581450 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.82 | 59.0 | 5.86e-01 | 76.9% | 72.7% |
| 4550123 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.80 | 54.0 | 5.20e-01 | 71.2% | 63.3% |
| 3576167 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.79 | 69.0 | 5.01e-01 | 96.2% | 99.3% |
| 4148139 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.79 | 55.0 | 3.85e-01 | 73.1% | 24.5% |
| 4339699 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.78 | 54.0 | 5.33e-01 | 73.1% | 69.1% |
| 4562263 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.77 | 64.0 | 3.94e-01 | 96.2% | 15.8% |
| 3329805 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.77 | 53.0 | 3.75e-01 | 76.9% | 23.7% |
| 4886009 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.76 | 64.0 | 3.92e-01 | 100.0% | 16.0% |
| 3730471 | 4982.1.1.4 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › SYS1 | 0.76 | 68.0 | 4.97e-01 | 100.0% | 48.9% |
| 3644937 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.75 | 51.0 | 3.61e-01 | 75.0% | 23.1% |
| 3826046 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.75 | 51.0 | 3.55e-01 | 71.2% | 23.6% |
| 4391471 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.74 | 51.0 | 5.07e-01 | 73.1% | 69.1% |
| 5054485 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.74 | 57.0 | 4.91e-01 | 82.7% | 93.8% |
| 3347305 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.74 | 53.0 | 3.64e-01 | 78.8% | 23.6% |
| 3971933 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 50.0 | 4.66e-01 | 71.2% | 58.5% |
| 3662110 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.73 | 59.0 | 3.96e-01 | 92.3% | 23.3% |
| 3493226 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 61.0 | 5.70e-01 | 100.0% | 75.4% |
| 3308167 | 7020.1.1.0 ↗ | few secondary structure elements › Influenza A M2 transmembrane domain › Influenza A M2 transmembrane domain › Influenza A M2 transmembrane domain | 0.68 | 55.0 | 5.85e-01 | 86.5% | 100.0% |
| 3288971 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.68 | 46.0 | 3.39e-01 | 76.9% | 25.3% |
| 3927541 | 3065.1.1.0 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins | 0.67 | 48.0 | 3.42e-01 | 80.8% | 24.1% |
| 3720430 | 148.1.3.212 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 | 0.67 | 58.0 | 4.43e-01 | 100.0% | 76.8% |
| 5069130 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.65 | 55.0 | 5.57e-01 | 98.1% | 100.0% |
| 5059008 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.65 | 57.0 | 4.37e-01 | 100.0% | 64.2% |
| 3585028 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.63 | 52.0 | 4.15e-01 | 90.4% | 75.0% |
| 3284461 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 47.0 | 3.15e-01 | 94.2% | 19.6% |
| 3257084 | 2004.1.1.473 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII, AAA_11 | 0.57 | 51.0 | 2.89e-01 | 100.0% | 76.6% |
D2
high
residues 65-188
Domain cluster:
rep: MN695334.1__QGT54496.1__b3_0254__00238__D2-120
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wojA00 | 3.90.1740.10 | Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily | 0.86 | 81.0 | 6.67e-01 | 100.0% | 97.6% |
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.64 | 59.0 | 5.18e-01 | 100.0% | 85.8% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.64 | 59.0 | 5.26e-01 | 100.0% | 85.4% |
| 1v43A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 31.0 | 3.97e-01 | 98.4% | 100.0% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 24.0 | 3.55e-01 | 87.9% | 94.0% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 29.0 | 3.70e-01 | 95.2% | 91.0% |
| 2lgnA00 | 2.60.40.2850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 23.0 | 2.93e-01 | 100.0% | 66.7% |
| 2c9jA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 46.0 | 3.88e-01 | 98.4% | 87.3% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 45.0 | 3.77e-01 | 97.6% | 86.2% |
| 2uvaG08 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 39.0 | 3.05e-01 | 82.3% | 61.4% |
| 1uisA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 45.0 | 3.73e-01 | 98.4% | 83.9% |
| 2hboA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 33.0 | 3.30e-01 | 76.6% | 60.9% |
| 1n08A00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.50 | 38.0 | 3.58e-01 | 92.7% | 64.9% |
| 4bkwA03 | 3.30.500.40 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.50 | 37.0 | 3.71e-01 | 100.0% | 76.2% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.50 | 36.0 | 3.83e-01 | 98.4% | 89.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3608079 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.87 | 83.0 | 7.92e-01 | 100.0% | 97.9% |
| 3871657 | 264.1.1.3 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CNPase | 0.86 | 82.0 | 6.38e-01 | 100.0% | 87.1% |
| 3709497 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.86 | 82.0 | 7.69e-01 | 100.0% | 94.5% |
| 3203190 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.85 | 80.0 | 7.57e-01 | 100.0% | 93.8% |
| 3611297 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.84 | 80.0 | 7.52e-01 | 100.0% | 95.8% |
| 3744887 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.83 | 77.0 | 6.96e-01 | 99.2% | 98.8% |
| 3480974 | 264.1.1.3 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CNPase | 0.83 | 78.0 | 6.14e-01 | 100.0% | 98.7% |
| 3264230 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.83 | 80.0 | 7.78e-01 | 100.0% | 98.5% |
| 3497100 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.82 | 77.0 | 6.04e-01 | 100.0% | 97.1% |
| 3835887 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.82 | 77.0 | 7.20e-01 | 100.0% | 100.0% |
| 3182852 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.82 | 77.0 | 6.43e-01 | 100.0% | 96.5% |
| 3176561 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.80 | 74.0 | 6.22e-01 | 99.2% | 98.0% |
| 3673377 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.80 | 73.0 | 6.95e-01 | 98.4% | 100.0% |
| 3594510 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.80 | 75.0 | 6.15e-01 | 100.0% | 98.1% |
| 3606700 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.80 | 75.0 | 6.31e-01 | 100.0% | 99.0% |
| 3591493 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.73 | 68.0 | 6.40e-01 | 100.0% | 95.9% |
| 5055120 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.60 | 50.0 | 5.21e-01 | 100.0% | 96.5% |
| 3690734 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.58 | 52.0 | 4.76e-01 | 100.0% | 89.1% |
| 1549209 | 264.1.1.2 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A | 0.57 | 52.0 | 4.96e-01 | 100.0% | 86.8% |
| 3355665 | 3863.1.1.1 ↗ | beta barrels › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Ysc84 | 0.53 | 42.0 | 3.63e-01 | 100.0% | 52.7% |
| 5043036 | 1.1.7.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase | 0.53 | 42.0 | 4.31e-01 | 89.5% | 91.3% |
| 3062826 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.51 | 45.0 | 3.71e-01 | 98.4% | 82.3% |
| 4995187 | 1.1.7.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase | 0.51 | 42.0 | 4.27e-01 | 87.9% | 91.7% |
| 4883811 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.51 | 44.0 | 3.74e-01 | 98.4% | 85.3% |