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IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_47723_47905

Arc-Vir

IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_47723_47905

Identity

Kingdom:
archaea

Quality

89.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.78 58.0 5.32e-01 90.4% 62.7%
4dbgB02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 62.0 5.93e-01 98.1% 83.6%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.72 54.0 5.02e-01 96.2% 62.9%
1ufzA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 56.0 5.46e-01 100.0% 79.3%
1kyqA03 1.10.3280.10 Mainly Alpha › Orthogonal Bundle › Siro heme synthase C-terminal domain-like › Siroheme synthase; domain 3 0.71 61.0 5.26e-01 100.0% 73.8%
3nrkA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.62 41.0 2.79e-01 71.2% 17.3%
6ianC01 1.10.418.70 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain 0.61 44.0 3.46e-01 80.8% 84.2%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.61 47.0 4.40e-01 96.2% 69.2%
2kpqA01 6.10.250.730 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 52.0 4.68e-01 100.0% 98.6%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 41.0 3.85e-01 73.1% 55.9%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.57 48.0 4.76e-01 96.2% 90.9%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 2.81e-01 75.0% 38.7%
3khyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 46.0 3.14e-01 98.1% 33.9%
3r9pB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.07e-01 100.0% 27.7%
4fqnC00 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.51 40.0 3.57e-01 98.1% 57.6%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3249392 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 69.0 6.44e-01 100.0% 86.2%
4119015 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 67.0 6.50e-01 100.0% 90.0%
3369542 103.1.1.3 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.78 68.0 6.50e-01 98.1% 85.0%
4341780 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.78 67.0 6.26e-01 100.0% 80.0%
3691983 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.77 64.0 6.36e-01 92.3% 87.3%
3289269 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 67.0 5.48e-01 98.1% 58.9%
5004958 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.76 65.0 6.41e-01 96.2% 96.4%
3643079 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.76 59.0 5.40e-01 100.0% 64.3%
3594325 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.74 57.0 5.80e-01 94.2% 90.0%
3887909 148.1.3.5 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.73 60.0 5.41e-01 96.2% 70.7%
5040543 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.72 61.0 6.05e-01 96.2% 90.9%
4651138 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.71 56.0 5.44e-01 100.0% 76.7%
3597328 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 60.0 5.09e-01 100.0% 84.4%
3730375 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.70 57.0 3.36e-01 100.0% 11.5%
5011414 101.1.2.233 ↗ alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.68 41.0 3.96e-01 100.0% 53.3%
3396599 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.68 57.0 5.50e-01 98.1% 96.7%
3226006 367.1.1.2 ↗ few secondary structure elements › Insulin-like › Insulin-like › Insulin-like › Ins_beta 0.67 48.0 4.98e-01 94.2% 93.3%
4015710 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 56.0 4.89e-01 100.0% 74.1%
3826931 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 53.0 5.29e-01 100.0% 90.9%
4157292 3317.1.1.2 ↗ alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.66 55.0 5.31e-01 100.0% 85.0%
5055046 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.66 54.0 5.26e-01 98.1% 86.7%
3950215 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.64 44.0 2.74e-01 71.2% 47.2%
3739094 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 45.0 4.22e-01 76.9% 60.0%
3458617 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.63 47.0 2.91e-01 80.8% 18.6%
2389464 3009.1.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.62 50.0 4.82e-01 94.2% 79.0%
4933038 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.61 47.0 3.48e-01 98.1% 87.2%
5060625 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.60 49.0 3.37e-01 100.0% 90.2%
4941976 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 52.0 4.10e-01 100.0% 85.5%
5028119 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.58 45.0 4.13e-01 96.2% 64.0%
5026526 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.55 45.0 3.74e-01 94.2% 67.0%
5069994 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.55 43.0 4.07e-01 96.2% 81.4%
3707416 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.50 39.0 2.43e-01 84.6% 39.3%