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IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_74254_74778
Arc-VirIMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_74254_74778
Identity
- Kingdom:
- archaea
Quality
79.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-110
Domain cluster:
rep: rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00008__D11-120
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04026.18 best | SpoVG | 57.1 | 2.40e-15 | 97.7% | 97.6% |
D2
high
residues 113-173
Domain cluster:
rep: KT070866.1__AKQ08288.1__PBC4_096__00096__D2-61
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.86 | 75.0 | 6.80e-01 | 100.0% | 72.2% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.78 | 68.0 | 6.41e-01 | 100.0% | 80.3% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.75 | 60.0 | 5.63e-01 | 100.0% | 71.1% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.74 | 59.0 | 5.52e-01 | 100.0% | 71.1% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.70 | 55.0 | 5.36e-01 | 100.0% | 77.6% |
| 1vq3B00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.66 | 58.0 | 5.24e-01 | 100.0% | 96.4% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.66 | 48.0 | 4.89e-01 | 100.0% | 78.3% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.66 | 58.0 | 5.27e-01 | 100.0% | 95.2% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.61 | 46.0 | 4.08e-01 | 100.0% | 55.1% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.61 | 49.0 | 3.58e-01 | 100.0% | 32.0% |
| 1uenA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 46.0 | 3.71e-01 | 100.0% | 40.8% |
| 5c86A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 49.0 | 4.22e-01 | 100.0% | 56.4% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 50.0 | 4.08e-01 | 100.0% | 50.4% |
| 3bb6C00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 39.0 | 3.23e-01 | 100.0% | 37.5% |
| 1x9tA02 | 3.90.1620.10 | Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 | 0.58 | 49.0 | 3.25e-01 | 100.0% | 38.6% |
| 2pmvA02 | 2.170.130.30 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › | 0.57 | 48.0 | 4.10e-01 | 100.0% | 93.5% |
| 6p3xB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.56 | 49.0 | 3.55e-01 | 100.0% | 35.0% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.55 | 46.0 | 4.28e-01 | 96.7% | 97.5% |
| 3kxyT00 | 6.20.290.10 | Special › Other non-globular › Dna Ligase; domain 1 › | 0.55 | 33.0 | 3.23e-01 | 100.0% | 53.8% |
| 3b8mC01 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.55 | 45.0 | 3.53e-01 | 98.4% | 100.0% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.55 | 41.0 | 3.96e-01 | 100.0% | 70.1% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 3.54e-01 | 78.7% | 68.8% |
| 5u8rA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 43.0 | 3.64e-01 | 100.0% | 50.0% |
| 2zaiA04 | 2.60.40.3030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 46.0 | 3.71e-01 | 100.0% | 59.8% |
| 2hdeA01 | 3.10.20.550 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit | 0.54 | 42.0 | 3.50e-01 | 100.0% | 44.7% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 42.0 | 3.52e-01 | 100.0% | 48.6% |
| 1f21A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 45.0 | 3.50e-01 | 100.0% | 78.3% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.53 | 46.0 | 3.89e-01 | 100.0% | 82.1% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.53 | 36.0 | 3.28e-01 | 72.1% | 63.6% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.53 | 42.0 | 3.01e-01 | 86.9% | 47.8% |
| 3rbsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.35e-01 | 100.0% | 53.4% |
| 5wm1A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.51 | 43.0 | 3.66e-01 | 100.0% | 77.1% |
| 6wl5A01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.51 | 35.0 | 2.74e-01 | 72.1% | 40.3% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.53e-01 | 96.7% | 85.1% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 2.82e-01 | 82.0% | 76.4% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 42.0 | 2.71e-01 | 93.4% | 81.6% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 43.0 | 3.78e-01 | 100.0% | 96.9% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2106284 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.80 | 70.0 | 6.79e-01 | 100.0% | 85.1% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.80 | 66.0 | 6.76e-01 | 100.0% | 91.5% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.79 | 65.0 | 6.62e-01 | 100.0% | 90.0% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.79 | 65.0 | 5.33e-01 | 100.0% | 51.4% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.78 | 64.0 | 6.35e-01 | 100.0% | 84.4% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.77 | 64.0 | 6.07e-01 | 100.0% | 77.1% |
| 2106285 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.76 | 63.0 | 5.11e-01 | 100.0% | 50.0% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.76 | 62.0 | 6.38e-01 | 100.0% | 93.1% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.75 | 61.0 | 5.73e-01 | 100.0% | 72.0% |
| 3987406 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.71 | 61.0 | 5.71e-01 | 96.7% | 76.0% |
| 3965010 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.71 | 55.0 | 4.87e-01 | 100.0% | 57.8% |
| 223776 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.70 | 55.0 | 5.27e-01 | 100.0% | 73.2% |
| 3699329 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.70 | 49.0 | 3.01e-01 | 96.7% | 12.7% |
| 3732370 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 54.0 | 5.53e-01 | 100.0% | 88.3% |
| 159110 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.66 | 58.0 | 5.27e-01 | 100.0% | 95.2% |
| 3928806 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 54.0 | 4.61e-01 | 100.0% | 93.3% |
| 3338688 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.60 | 52.0 | 5.12e-01 | 100.0% | 93.8% |
| 224141 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.60 | 51.0 | 4.64e-01 | 98.4% | 94.0% |
| 3409700 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.60 | 46.0 | 3.83e-01 | 100.0% | 46.1% |
| 4642338 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.59 | 44.0 | 4.75e-01 | 100.0% | 92.5% |
| 3481274 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 44.0 | 3.54e-01 | 80.3% | 39.5% |
| 4999285 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.58 | 44.0 | 3.08e-01 | 83.6% | 42.8% |
| 4015296 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 48.0 | 4.68e-01 | 98.4% | 85.7% |
| 3803369 | 7510.1.1.0 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like | 0.58 | 41.0 | 3.34e-01 | 75.4% | 77.5% |
| 3683470 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.57 | 47.0 | 3.27e-01 | 96.7% | 27.8% |
| 3613163 | 1116.1.1.0 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain | 0.57 | 50.0 | 3.51e-01 | 100.0% | 51.5% |
| 4237265 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 48.0 | 4.06e-01 | 100.0% | 56.4% |
| 3791696 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 43.0 | 3.29e-01 | 100.0% | 33.5% |
| 3716479 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.56 | 48.0 | 3.52e-01 | 100.0% | 41.1% |
| 3222289 | 4969.1.1.4 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › POL3_N | 0.56 | 46.0 | 3.89e-01 | 98.4% | 95.7% |
| 5083482 | 12.1.1.22 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C | 0.55 | 40.0 | 3.52e-01 | 100.0% | 50.5% |
| 1692385 | 2492.1.1.23 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NAD2 | 0.55 | 44.0 | 3.27e-01 | 100.0% | 31.0% |
| 3858396 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.55 | 49.0 | 3.86e-01 | 100.0% | 77.6% |
| 4990834 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.54 | 39.0 | 4.31e-01 | 98.4% | 94.0% |
| 4278285 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.54 | 47.0 | 2.82e-01 | 100.0% | 73.2% |
| 3266035 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 47.0 | 4.00e-01 | 100.0% | 69.9% |
| 3350186 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.54 | 38.0 | 3.07e-01 | 77.0% | 64.4% |
| 3576850 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.54 | 46.0 | 2.93e-01 | 96.7% | 77.5% |
| 1007206 | 2492.1.1.23 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NAD2 | 0.53 | 44.0 | 3.19e-01 | 100.0% | 33.7% |
| 3585284 | 10.40.1.1 ↗ | beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR | 0.53 | 44.0 | 3.24e-01 | 100.0% | 32.1% |
| 1002449 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.51 | 38.0 | 3.12e-01 | 82.0% | 59.0% |
| 4879628 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.51 | 42.0 | 3.09e-01 | 100.0% | 42.9% |
| 3248836 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 37.0 | 2.82e-01 | 80.3% | 31.6% |
| 3336917 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.50 | 40.0 | 2.54e-01 | 93.4% | 44.4% |
| 5021230 | 101.1.1.544 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 | 0.50 | 42.0 | 3.48e-01 | 93.4% | 72.7% |