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IMGVR_UViG_3300037526_000124-3300037526-Ga0310928_001190_3631_3756
Arc-VirIMGVR_UViG_3300037526_000124-3300037526-Ga0310928_001190_3631_3756
Identity
- Kingdom:
- archaea
Quality
70.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-41
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gb5A01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.70 | 52.0 | 3.74e-01 | 85.4% | 28.6% |
| 2aklA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.67 | 49.0 | 4.88e-01 | 85.4% | 79.1% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.67 | 46.0 | 3.98e-01 | 75.6% | 44.4% |
| 2yrtA00 | 4.10.1130.20 | Few Secondary Structures › Irregular › btk motif of tyrosine-protein kinase itk › | 0.64 | 45.0 | 3.75e-01 | 75.6% | 62.7% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.64 | 48.0 | 3.82e-01 | 87.8% | 44.1% |
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.64 | 44.0 | 3.61e-01 | 75.6% | 69.5% |
| 1pg5B02 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.63 | 51.0 | 4.72e-01 | 100.0% | 100.0% |
| 2w5qA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.62 | 38.0 | 2.98e-01 | 80.5% | 25.8% |
| 2jo6A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.62 | 48.0 | 3.66e-01 | 90.2% | 82.7% |
| 5flxf00 | 6.20.50.150 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.62 | 44.0 | 3.79e-01 | 80.5% | 46.6% |
| 2poiA00 | 1.10.1170.10 | Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A | 0.60 | 50.0 | 4.14e-01 | 100.0% | 51.3% |
| 3gb0A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.60 | 49.0 | 3.13e-01 | 100.0% | 50.6% |
| 2v05A01 | 2.10.270.20 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › | 0.60 | 41.0 | 3.02e-01 | 75.6% | 66.4% |
| 3d89A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.59 | 45.0 | 3.31e-01 | 92.7% | 75.0% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.59 | 44.0 | 3.45e-01 | 90.2% | 92.7% |
| 1y8fA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 41.0 | 3.89e-01 | 75.6% | 90.2% |
| 1sesA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 39.0 | 2.37e-01 | 70.7% | 88.1% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 38.0 | 3.92e-01 | 80.5% | 71.8% |
| 4ua3A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 44.0 | 3.03e-01 | 97.6% | 97.8% |
| 4gniA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.56 | 41.0 | 3.78e-01 | 82.9% | 75.4% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 37.0 | 3.17e-01 | 70.7% | 95.9% |
| 1eepA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 41.0 | 2.47e-01 | 82.9% | 72.3% |
| 3lkbA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 41.0 | 2.93e-01 | 95.1% | 100.0% |
| 3o0wA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 37.0 | 2.36e-01 | 70.7% | 18.4% |
| 1orrC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 39.0 | 2.35e-01 | 80.5% | 50.1% |
| 1go3E01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 45.0 | 3.57e-01 | 100.0% | 69.1% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.91e-01 | 90.2% | 100.0% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 40.0 | 3.12e-01 | 100.0% | 96.1% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 42.0 | 3.25e-01 | 100.0% | 74.3% |
| 2p62A01 | 3.40.50.10620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PH0156-like domains | 0.52 | 37.0 | 2.70e-01 | 95.1% | 23.0% |
| 4xtvB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.57e-01 | 80.5% | 91.7% |
| 3ca8A01 | 1.10.3620.10 | Mainly Alpha › Orthogonal Bundle › YdcF fold › YdcF like domain | 0.52 | 40.0 | 3.22e-01 | 100.0% | 97.2% |
| 5tw4A02 | 2.30.140.20 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain | 0.51 | 38.0 | 3.37e-01 | 85.4% | 82.6% |
| 2vhlA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 41.0 | 2.54e-01 | 97.6% | 93.0% |
| 4msxA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 38.0 | 3.09e-01 | 90.2% | 60.2% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.50 | 40.0 | 2.74e-01 | 100.0% | 70.4% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961808 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.84 | 56.0 | 5.73e-01 | 78.0% | 72.5% |
| 5077957 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.81 | 55.0 | 3.77e-01 | 73.2% | 22.3% |
| 3260584 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.81 | 57.0 | 5.58e-01 | 78.0% | 68.9% |
| 3310050 | 375.4.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C | 0.79 | 56.0 | 5.73e-01 | 75.6% | 87.5% |
| 5072895 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.79 | 61.0 | 5.74e-01 | 85.4% | 88.0% |
| 5047258 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 56.0 | 5.91e-01 | 80.5% | 88.6% |
| 4079671 | 375.1.1.148 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RPA_interact_C | 0.78 | 52.0 | 5.33e-01 | 73.2% | 72.5% |
| 4982959 | 3922.1.1.357 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 | 0.77 | 60.0 | 4.54e-01 | 90.2% | 36.0% |
| 4929508 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 55.0 | 3.95e-01 | 85.4% | 26.4% |
| 5066014 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.73 | 53.0 | 3.68e-01 | 87.8% | 22.8% |
| 3374952 | 375.4.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C | 0.73 | 58.0 | 4.57e-01 | 87.8% | 54.1% |
| 3662922 | 375.1.1.148 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RPA_interact_C | 0.73 | 58.0 | 5.46e-01 | 87.8% | 94.0% |
| 3590585 | 375.1.1.72 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Toprim_Crpt | 0.71 | 59.0 | 4.63e-01 | 95.1% | 83.3% |
| 5066865 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 52.0 | 5.00e-01 | 82.9% | 82.0% |
| 3474008 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.70 | 56.0 | 3.93e-01 | 90.2% | 31.1% |
| 3559152 | 386.1.1.299 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30478 | 0.70 | 50.0 | 4.70e-01 | 85.4% | 62.0% |
| 3409936 | 375.1.1.76 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RRN7 | 0.70 | 49.0 | 5.18e-01 | 75.6% | 93.9% |
| 3498480 | 375.4.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C | 0.70 | 54.0 | 4.33e-01 | 85.4% | 96.2% |
| 3519654 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.69 | 47.0 | 3.22e-01 | 73.2% | 21.3% |
| 3581545 | 375.1.1.76 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RRN7 | 0.69 | 48.0 | 5.02e-01 | 75.6% | 88.6% |
| 4202634 | 375.1.1.11 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27 | 0.69 | 49.0 | 4.40e-01 | 78.0% | 55.0% |
| 8020 | 375.1.1.40 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YjdM_Zn_Ribbon | 0.68 | 49.0 | 5.00e-01 | 85.4% | 86.8% |
| 3216830 | 375.1.1.76 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RRN7 | 0.68 | 46.0 | 4.86e-01 | 75.6% | 100.0% |
| 1530779 | 375.1.1.11 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27 | 0.67 | 46.0 | 3.62e-01 | 75.6% | 32.7% |
| 3330763 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.67 | 51.0 | 5.14e-01 | 85.4% | 87.5% |
| 5060162 | 66.1.1.4 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › FtrD-like | 0.66 | 54.0 | 3.99e-01 | 100.0% | 38.7% |
| 5050229 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 51.0 | 4.45e-01 | 90.2% | 61.4% |
| 2332137 | 375.1.1.11 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27 | 0.66 | 46.0 | 3.93e-01 | 78.0% | 46.6% |
| 4389625 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.65 | 51.0 | 4.74e-01 | 92.7% | 78.2% |
| 3587978 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.63 | 41.0 | 2.33e-01 | 82.9% | 6.1% |
| 4929700 | 529.1.1.0 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) | 0.63 | 46.0 | 3.71e-01 | 82.9% | 44.4% |
| 119396 | 375.9.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger in leader protease Nsp1alpha › Zinc finger in leader protease Nsp1alpha › Zf-Nsp1alpha | 0.62 | 43.0 | 4.02e-01 | 73.2% | 57.7% |
| 5011867 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.61 | 51.0 | 3.48e-01 | 100.0% | 89.9% |
| 3481637 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 40.0 | 3.70e-01 | 80.5% | 50.9% |
| 4030668 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.61 | 44.0 | 3.85e-01 | 78.0% | 87.7% |
| 4975908 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.60 | 51.0 | 3.26e-01 | 100.0% | 85.5% |
| 2800346 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 44.0 | 4.38e-01 | 85.4% | 83.7% |
| 5025801 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.59 | 48.0 | 3.24e-01 | 100.0% | 92.4% |
| 4956433 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.58 | 49.0 | 3.80e-01 | 100.0% | 75.0% |
| 3688360 | 386.1.1.345 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF28347 | 0.58 | 43.0 | 4.27e-01 | 82.9% | 80.0% |
| 3591987 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.58 | 40.0 | 2.41e-01 | 75.6% | 55.4% |
| 3936917 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.58 | 45.0 | 4.73e-01 | 85.4% | 100.0% |
| 3926534 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.57 | 43.0 | 3.49e-01 | 92.7% | 38.9% |
| 3250073 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.57 | 40.0 | 2.86e-01 | 78.0% | 57.9% |
| 3752690 | 386.1.1.66 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Spt46 | 0.57 | 37.0 | 3.45e-01 | 78.0% | 46.3% |
| 3537939 | 386.1.1.316 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30902 | 0.56 | 42.0 | 4.10e-01 | 80.5% | 80.0% |
| 4941003 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.56 | 41.0 | 3.05e-01 | 80.5% | 55.5% |
| 3686965 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.55 | 43.0 | 4.02e-01 | 92.7% | 92.7% |
| 3600347 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.54 | 40.0 | 3.12e-01 | 87.8% | 82.7% |
| 3660528 | 109.4.1.1146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB | 0.53 | 41.0 | 2.35e-01 | 90.2% | 17.4% |
| 4927454 | 386.1.1.418 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-FPG_IleRS | 0.52 | 39.0 | 3.86e-01 | 90.2% | 100.0% |
| 5025174 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.50 | 34.0 | 3.13e-01 | 80.5% | 72.9% |