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IMGVR_UViG_3300037526_000130-3300037526-Ga0310928_002977_5086_5940
Arc-VirIMGVR_UViG_3300037526_000130-3300037526-Ga0310928_002977_5086_5940
Identity
- Kingdom:
- archaea
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 69-149
Domain cluster:
rep: IMGVR_UViG_3300037558_003010-3300037558-Ga0314846_0006959_5107_6951__D399-479
D2
high
residues 153-251
Domain cluster:
rep: NC_070786.1__YP_010652336.1__PP460_gp222__00022__D22-123
D3
medium
residues 9-64
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7t4dA01 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.71 | 62.0 | 3.88e-01 | 98.2% | 42.2% |
| 4ph8A00 | 2.60.40.2910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.71 | 61.0 | 4.55e-01 | 100.0% | 45.3% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.67 | 56.0 | 3.63e-01 | 98.2% | 43.5% |
| 1h6uA03 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 49.0 | 4.12e-01 | 83.9% | 59.2% |
| 3ubgB01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.63 | 49.0 | 4.10e-01 | 83.9% | 69.8% |
| 5dvyA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 50.0 | 3.23e-01 | 100.0% | 34.4% |
| 3zghA00 | 2.60.40.3400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 46.0 | 3.43e-01 | 94.6% | 38.4% |
| 4hpqB00 | 2.60.270.60 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 | 0.58 | 37.0 | 2.97e-01 | 92.9% | 31.3% |
| 3e23A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 49.0 | 3.43e-01 | 100.0% | 99.0% |
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 44.0 | 3.29e-01 | 94.6% | 78.2% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 39.0 | 2.95e-01 | 73.2% | 30.1% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 39.0 | 3.22e-01 | 75.0% | 42.2% |
| 2p35A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 44.0 | 3.21e-01 | 94.6% | 81.6% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.54 | 47.0 | 3.37e-01 | 100.0% | 60.9% |
| 7alkA01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 42.0 | 3.21e-01 | 94.6% | 41.9% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.53 | 40.0 | 3.10e-01 | 94.6% | 34.8% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.52 | 38.0 | 3.47e-01 | 80.4% | 60.8% |
| 3mjkA00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.52 | 37.0 | 2.98e-01 | 80.4% | 47.3% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.51 | 36.0 | 2.66e-01 | 76.8% | 83.8% |
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.51 | 34.0 | 3.88e-01 | 87.5% | 97.6% |
| 4d8pB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.51 | 35.0 | 2.92e-01 | 92.9% | 40.2% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 40.0 | 2.42e-01 | 94.6% | 34.7% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012228 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.97 | 92.0 | 6.88e-01 | 100.0% | 46.7% |
| 5080009 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.75 | 63.0 | 5.04e-01 | 92.9% | 62.7% |
| 4941474 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.75 | 62.0 | 5.29e-01 | 94.6% | 66.3% |
| 2324089 | 11.1.1.325 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GldM_2nd | 0.74 | 57.0 | 4.86e-01 | 83.9% | 61.1% |
| 3628540 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 61.0 | 5.51e-01 | 94.6% | 98.8% |
| 5067731 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.72 | 54.0 | 4.56e-01 | 82.1% | 74.7% |
| 5011002 | 11.1.1.15 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD | 0.71 | 60.0 | 4.69e-01 | 94.6% | 45.0% |
| 3996763 | 11.1.1.351 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD | 0.70 | 50.0 | 4.38e-01 | 76.8% | 80.0% |
| 5062718 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 47.0 | 5.35e-01 | 92.9% | 100.0% |
| 4777486 | 11.1.1.1386 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28858, PF28861 | 0.66 | 49.0 | 3.99e-01 | 91.1% | 40.4% |
| 5010085 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 53.0 | 4.81e-01 | 94.6% | 65.0% |
| 3576134 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 53.0 | 5.55e-01 | 92.9% | 100.0% |
| 3581414 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 52.0 | 5.28e-01 | 91.1% | 98.2% |
| 4857423 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 51.0 | 4.37e-01 | 87.5% | 69.1% |
| 3772162 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.65 | 49.0 | 3.90e-01 | 96.4% | 38.4% |
| 5034346 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.64 | 53.0 | 3.35e-01 | 100.0% | 33.2% |
| 3675789 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 54.0 | 5.03e-01 | 92.9% | 94.3% |
| 5056319 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.64 | 47.0 | 3.36e-01 | 82.1% | 61.1% |
| 3701672 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.63 | 53.0 | 3.78e-01 | 94.6% | 37.1% |
| 3525910 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.63 | 46.0 | 3.81e-01 | 82.1% | 98.2% |
| 3579531 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.63 | 50.0 | 4.50e-01 | 94.6% | 70.6% |
| 4586646 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.61 | 50.0 | 3.97e-01 | 96.4% | 81.6% |
| 5045679 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 45.0 | 3.49e-01 | 85.7% | 36.0% |
| 3927968 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.61 | 49.0 | 3.76e-01 | 94.6% | 51.4% |
| 3627506 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.60 | 44.0 | 3.59e-01 | 78.6% | 45.5% |
| 3367010 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.60 | 49.0 | 3.56e-01 | 94.6% | 41.7% |
| 5050547 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.60 | 41.0 | 3.26e-01 | 71.4% | 38.3% |
| 4947171 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.59 | 40.0 | 3.30e-01 | 71.4% | 41.9% |
| 1829221 | 2.1.1.5 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N | 0.59 | 40.0 | 2.94e-01 | 71.4% | 27.7% |
| 3389979 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.58 | 41.0 | 3.27e-01 | 75.0% | 40.8% |
| 4600806 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.58 | 40.0 | 3.19e-01 | 71.4% | 40.0% |
| 2389747 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.56 | 45.0 | 3.19e-01 | 100.0% | 42.7% |
| 3417120 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.56 | 45.0 | 3.59e-01 | 91.1% | 50.8% |
| 3705135 | 101.17.1.3 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_1 | 0.55 | 39.0 | 3.35e-01 | 94.6% | 47.2% |
| 4351239 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.54 | 40.0 | 3.25e-01 | 85.7% | 57.7% |
| 4187457 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.53 | 40.0 | 3.23e-01 | 89.3% | 60.8% |
| 5067682 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 36.0 | 3.11e-01 | 71.4% | 48.9% |
| 3817650 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.53 | 44.0 | 3.78e-01 | 100.0% | 92.0% |
| 3634542 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.53 | 46.0 | 3.32e-01 | 98.2% | 34.5% |
| 3601335 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.52 | 45.0 | 3.21e-01 | 100.0% | 88.3% |
| 2505866 | 1.2.1.4 ↗ | beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain › Calici_coat, Calici_coat_C | 0.52 | 41.0 | 3.15e-01 | 92.9% | 50.7% |
| 4948943 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 38.0 | 3.43e-01 | 80.4% | 66.7% |
| 2756373 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.51 | 41.0 | 3.35e-01 | 94.6% | 48.3% |