←Back to structures
IMGVR_UViG_3300037528_000219-3300037528-Ga0334897_010548_4928_5548
Arc-VirIMGVR_UViG_3300037528_000219-3300037528-Ga0334897_010548_4928_5548
Identity
- Kingdom:
- archaea
Quality
86.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-102
Domain cluster:
rep: MW584211.1__QSM05137.1__PROPHIGD102-1_38__00038__D323-387
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20530.4 best | DUF6745 | 61.4 | 1.10e-16 | 97.8% | 39.3% |
D2
high
residues 104-191
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1odhA01 | 2.20.25.670 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain | 0.68 | 35.0 | 3.90e-01 | 85.2% | 62.0% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 39.0 | 4.29e-01 | 89.8% | 74.6% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.58 | 34.0 | 4.06e-01 | 86.4% | 98.0% |
| 3aihB01 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.57 | 38.0 | 3.58e-01 | 85.2% | 56.1% |
| 4o2hA00 | 3.10.450.610 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 3.55e-01 | 84.1% | 48.9% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 36.0 | 4.13e-01 | 96.6% | 92.1% |
| 2konA00 | 3.30.160.350 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 39.0 | 4.05e-01 | 94.3% | 80.5% |
| 2h2yA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 44.0 | 4.07e-01 | 98.9% | 66.4% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.55 | 30.0 | 2.60e-01 | 80.7% | 29.8% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.55 | 46.0 | 3.00e-01 | 100.0% | 22.1% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.55 | 46.0 | 3.39e-01 | 100.0% | 33.7% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 36.0 | 3.87e-01 | 93.2% | 81.1% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.54 | 34.0 | 4.10e-01 | 84.1% | 100.0% |
| 1zs8A01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.54 | 43.0 | 3.55e-01 | 89.8% | 93.0% |
| 1x23B00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 42.0 | 3.57e-01 | 98.9% | 50.0% |
| 1av4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.52 | 46.0 | 2.96e-01 | 100.0% | 71.0% |
| 1uyjA02 | 2.170.15.10 | Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 | 0.52 | 47.0 | 3.63e-01 | 100.0% | 87.4% |
| 5egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 42.0 | 3.44e-01 | 88.6% | 73.1% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.28e-01 | 94.3% | 56.5% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 33.0 | 3.62e-01 | 95.5% | 82.6% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 38.0 | 3.29e-01 | 100.0% | 50.4% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.50 | 41.0 | 2.96e-01 | 89.8% | 72.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4226251 | 375.1.1.252 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 | 0.68 | 32.0 | 3.73e-01 | 71.6% | 61.7% |
| 4028728 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.67 | 40.0 | 4.80e-01 | 86.4% | 94.5% |
| 3824181 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.66 | 44.0 | 5.14e-01 | 84.1% | 100.0% |
| 3190757 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.66 | 40.0 | 4.70e-01 | 87.5% | 90.0% |
| 3391411 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 32.0 | 4.22e-01 | 76.1% | 97.5% |
| 3614906 | 4.26.1.8 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 | 0.63 | 35.0 | 3.84e-01 | 79.5% | 67.1% |
| 3496143 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.60 | 44.0 | 3.74e-01 | 98.9% | 46.9% |
| 4026900 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.59 | 37.0 | 3.42e-01 | 87.5% | 47.8% |
| 3208374 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.58 | 47.0 | 4.00e-01 | 87.5% | 57.9% |
| 3462090 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.55 | 49.0 | 3.30e-01 | 100.0% | 27.5% |
| 3607857 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 38.0 | 3.67e-01 | 93.2% | 63.0% |
| 4991994 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 33.0 | 3.86e-01 | 80.7% | 96.4% |
| 3468658 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 46.0 | 3.29e-01 | 98.9% | 38.7% |
| 3499841 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 39.0 | 3.91e-01 | 95.5% | 74.4% |
| 3370941 | 295.1.1.35 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FBA_1 | 0.54 | 47.0 | 3.80e-01 | 95.5% | 58.2% |
| 4261656 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.53 | 41.0 | 3.24e-01 | 86.4% | 61.0% |
| 4942634 | 3111.1.1.0 ↗ | beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain | 0.53 | 47.0 | 4.47e-01 | 100.0% | 82.9% |
| 4990492 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 29.0 | 3.48e-01 | 77.3% | 94.0% |
| 4027244 | 6127.1.1.0 ↗ | beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein | 0.51 | 39.0 | 3.96e-01 | 83.0% | 86.7% |
| 2321284 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 44.0 | 4.04e-01 | 100.0% | 72.8% |
| 4118534 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 40.0 | 2.44e-01 | 83.0% | 23.0% |
| 4104219 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.51 | 33.0 | 3.65e-01 | 95.5% | 89.2% |