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IMGVR_UViG_3300037552_000019-3300037552-Ga0314852_000725_9890_10513

Arc-Vir

IMGVR_UViG_3300037552_000019-3300037552-Ga0314852_000725_9890_10513

Quality

84.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-100
PDB
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6kqsA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.90 69.0 4.39e-01 100.0% 18.9%
4oj5C04 2.160.20.130 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.77 53.0 4.29e-01 100.0% 38.4%
2kjqA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 38.0 3.52e-01 100.0% 54.0%
3bosB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 39.0 3.37e-01 100.0% 46.3%
7w6bA01 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.53 40.0 2.98e-01 79.0% 98.2%
4jwjA00 3.40.1280.30 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › 0.51 40.0 3.27e-01 84.0% 67.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046331 207.2.1.33 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pel9A-like_beta_helix 0.92 66.0 4.20e-01 100.0% 17.6%
2831960 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.90 70.0 4.23e-01 100.0% 14.2%
1841000 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.90 65.0 7.54e-01 99.0% 100.0%
4970380 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.85 60.0 4.08e-01 100.0% 22.8%
4969480 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.84 58.0 4.08e-01 98.0% 24.9%
4211588 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.84 62.0 3.91e-01 100.0% 16.6%
2831959 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.84 69.0 4.12e-01 100.0% 14.4%
4466879 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.84 59.0 3.84e-01 100.0% 18.5%
3272834 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.82 61.0 3.61e-01 100.0% 12.0%
4954462 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.81 61.0 3.91e-01 100.0% 18.8%
3263728 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.79 63.0 4.69e-01 100.0% 35.7%
4980561 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.78 57.0 3.79e-01 100.0% 20.5%
4954461 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.78 62.0 4.27e-01 100.0% 26.8%
1285029 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.77 53.0 3.23e-01 100.0% 11.9%
2464818 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.77 67.0 7.04e-01 100.0% 98.9%
3254636 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.76 59.0 3.76e-01 100.0% 17.6%
3256985 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.76 58.0 3.67e-01 100.0% 16.9%
3250810 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.75 60.0 4.36e-01 100.0% 32.9%
3517947 1089.1.1.1 a+b two layers › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › AsnRS_N 0.69 41.0 4.43e-01 96.0% 70.6%
3221312 1089.1.1.1 a+b two layers › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › AsnRS_N 0.68 41.0 4.74e-01 100.0% 81.3%
3266425 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.66 59.0 3.34e-01 100.0% 9.2%
3821680 2488.1.1.18 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DTW 0.52 42.0 3.35e-01 88.0% 86.0%
3576862 2488.1.1.19 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › PF27710 0.52 41.0 3.19e-01 85.0% 59.1%
3839002 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 3.42e-01 100.0% 43.2%
5024276 2004.1.1.186 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.50 40.0 3.16e-01 88.0% 53.9%
D2 medium residues 101-208
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nk6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.84 73.0 4.74e-01 97.2% 23.3%
1dabA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.83 79.0 4.85e-01 100.0% 36.5%
2pygA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.83 76.0 5.05e-01 96.3% 30.7%
1ru4A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.81 76.0 5.02e-01 100.0% 45.0%
4hwvB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.80 73.0 4.65e-01 97.2% 56.7%
2inuA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.80 73.0 4.81e-01 97.2% 30.6%
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.80 72.0 4.75e-01 98.1% 36.1%
3eqnA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.80 72.0 4.89e-01 97.2% 48.6%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 71.0 5.50e-01 96.3% 57.5%
4pmhA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 71.0 4.80e-01 96.3% 46.4%
3vmvA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 72.0 5.01e-01 98.1% 52.2%
5c1cA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.78 71.0 5.01e-01 96.3% 54.8%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.77 57.0 6.04e-01 96.3% 85.6%
1jtaA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.76 71.0 4.79e-01 100.0% 52.6%
2bm5B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.75 55.0 4.64e-01 96.3% 46.1%
1bheA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.75 69.0 4.59e-01 98.1% 35.4%
5gkdA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 67.0 4.84e-01 97.2% 50.5%
1hg8A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 66.0 4.55e-01 96.3% 43.0%
1vblA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 68.0 4.49e-01 100.0% 38.2%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.74 67.0 4.18e-01 98.1% 25.5%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 55.0 4.84e-01 99.1% 54.1%
8tmsA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.73 67.0 4.83e-01 98.1% 51.8%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.72 55.0 4.82e-01 98.1% 54.8%
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.61 52.0 4.56e-01 92.6% 62.0%
2yuhA01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.60 55.0 4.68e-01 100.0% 75.0%
1igrA01 3.80.20.20 Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain 0.60 53.0 4.53e-01 100.0% 72.8%
3petA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.58 51.0 4.07e-01 97.2% 52.8%
4pufA01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.57 49.0 3.60e-01 96.3% 42.8%
4xjvA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.76e-01 100.0% 88.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5062382 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.88 70.0 5.18e-01 96.3% 36.3%
5034971 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.88 72.0 5.48e-01 96.3% 40.4%
4981294 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.87 75.0 6.22e-01 96.3% 55.4%
4941932 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.87 73.0 5.01e-01 96.3% 29.2%
3400664 207.2.1.70 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix 0.86 73.0 5.52e-01 97.2% 41.3%
5050988 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.85 70.0 5.08e-01 96.3% 34.4%
5081172 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.85 69.0 5.30e-01 96.3% 40.9%
5078365 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.83 71.0 5.63e-01 96.3% 47.3%
5065587 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.82 76.0 5.03e-01 97.2% 32.3%
5017767 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.82 76.0 5.80e-01 97.2% 56.8%
5047056 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.82 69.0 5.29e-01 96.3% 43.2%
4982073 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 75.0 5.15e-01 97.2% 35.5%
4982113 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 74.0 5.50e-01 97.2% 42.0%
1109309 207.2.1.3 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 0.81 73.0 4.65e-01 96.3% 57.6%
3502757 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.80 75.0 4.82e-01 98.1% 34.9%
3457531 207.2.1.4 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.80 73.0 5.45e-01 96.3% 55.9%
3539089 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.80 76.0 5.58e-01 100.0% 51.2%
5027446 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.80 72.0 5.36e-01 96.3% 42.0%
4980210 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.80 74.0 4.93e-01 98.1% 31.9%
3245719 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.80 73.0 4.74e-01 97.2% 27.1%
4928776 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.79 72.0 4.94e-01 96.3% 40.1%
3803805 207.2.1.4 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.79 71.0 5.74e-01 95.4% 66.8%
5045771 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.79 72.0 4.92e-01 97.2% 34.1%
3256108 207.2.1.43 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chlam_PMP 0.79 72.0 5.23e-01 97.2% 59.6%
5047146 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.78 67.0 5.51e-01 96.3% 53.0%
5040394 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.78 72.0 5.74e-01 97.2% 57.6%
5040381 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.78 70.0 4.58e-01 97.2% 26.7%
5034985 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.78 71.0 5.75e-01 97.2% 59.5%
4003464 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.77 72.0 4.86e-01 98.1% 36.0%
4981810 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.77 72.0 5.53e-01 97.2% 52.1%
5080460 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.77 71.0 4.29e-01 98.1% 18.2%
3264282 207.2.1.73 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › PF29740 0.76 68.0 5.14e-01 97.2% 57.6%
3686362 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.75 68.0 5.08e-01 98.1% 75.3%
3257166 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.75 68.0 4.78e-01 98.1% 41.3%
3260502 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.74 67.0 4.84e-01 98.1% 40.3%
3267495 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.74 68.0 4.00e-01 98.1% 15.4%
4884477 207.2.1.4 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.74 66.0 5.32e-01 99.1% 52.3%
3264291 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 66.0 4.82e-01 98.1% 44.0%
2337273 207.2.1.29 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_5 0.71 65.0 4.52e-01 100.0% 32.4%
3429908 208.2.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.65 43.0 4.26e-01 96.3% 64.3%
5006685 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.62 49.0 4.53e-01 96.3% 65.0%
3717030 207.6.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.62 54.0 4.22e-01 97.2% 48.1%
4028784 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.61 50.0 5.06e-01 97.2% 89.5%
4406918 207.6.1.16 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP 0.61 49.0 4.66e-01 95.4% 72.3%
3803729 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.60 36.0 4.39e-01 93.5% 98.5%
4321639 207.8.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.60 52.0 3.56e-01 98.1% 28.8%
3557991 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.57 50.0 3.66e-01 99.1% 41.3%
4029787 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.57 51.0 3.94e-01 97.2% 50.9%