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IMGVR_UViG_3300037552_000029-3300037552-Ga0314852_000381_15655_15876
Arc-VirIMGVR_UViG_3300037552_000029-3300037552-Ga0314852_000381_15655_15876
Identity
- Kingdom:
- archaea
Quality
91.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-60
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04126.19 best | Cyclophil_like | 89.1 | 2.90e-25 | 100.0% | 44.2% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zx8A01 | 2.40.100.20 | Mainly Beta › Beta Barrel › Cyclophilin › | 0.96 | 91.0 | 6.66e-01 | 100.0% | 43.2% |
| 2h5eA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 46.0 | 3.29e-01 | 77.8% | 50.0% |
| 1vziA01 | 2.20.28.100 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain | 0.62 | 42.0 | 4.64e-01 | 74.1% | 100.0% |
| 2yweA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 44.0 | 3.67e-01 | 79.6% | 90.0% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 43.0 | 4.06e-01 | 79.6% | 78.3% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 45.0 | 4.08e-01 | 87.0% | 83.7% |
| 6phxA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 43.0 | 3.57e-01 | 77.8% | 72.6% |
| 1dfxA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.59 | 47.0 | 3.63e-01 | 88.9% | 71.2% |
| 2yfoA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 42.0 | 3.53e-01 | 77.8% | 72.9% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.59 | 42.0 | 4.43e-01 | 77.8% | 98.0% |
| 5z0uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 3.58e-01 | 88.9% | 58.1% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.58 | 37.0 | 3.64e-01 | 77.8% | 57.4% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.58 | 37.0 | 3.54e-01 | 77.8% | 53.0% |
| 2xn2A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 42.0 | 3.52e-01 | 79.6% | 74.0% |
| 4gr5C01 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.57 | 37.0 | 3.58e-01 | 81.5% | 56.2% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.57 | 42.0 | 3.47e-01 | 81.5% | 95.1% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 41.0 | 3.94e-01 | 81.5% | 100.0% |
| 2hrvA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 39.0 | 3.29e-01 | 75.9% | 64.2% |
| 2xc8A00 | 2.60.40.2980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 39.0 | 3.04e-01 | 77.8% | 46.3% |
| 4jivD00 | 2.60.200.60 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 36.0 | 3.17e-01 | 74.1% | 91.4% |
| 3doaA03 | 3.40.970.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like | 0.53 | 34.0 | 3.59e-01 | 77.8% | 81.4% |
| 1tocR02 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.52 | 36.0 | 3.58e-01 | 83.3% | 69.0% |
| 3rnvA00 | 3.90.70.150 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Helper component proteinase | 0.52 | 33.0 | 2.61e-01 | 74.1% | 27.6% |
| 1pm4A00 | 2.60.120.510 | Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm | 0.52 | 39.0 | 3.07e-01 | 79.6% | 93.2% |
| 2hg6A00 | 3.90.1650.10 | Alpha Beta › Alpha-Beta Complex › PA1123-like › PA1123-like | 0.51 | 39.0 | 3.20e-01 | 87.0% | 62.3% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.51e-01 | 81.5% | 89.4% |
| 2h6cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 40.0 | 3.27e-01 | 100.0% | 73.6% |
| 4q7qB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.50 | 37.0 | 2.49e-01 | 85.2% | 38.5% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036934 | 75.1.1.4 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like | 0.98 | 94.0 | 6.83e-01 | 100.0% | 44.0% |
| 4972339 | 75.1.1.4 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like | 0.96 | 80.0 | 5.75e-01 | 100.0% | 36.2% |
| 4947787 | 75.1.1.0 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like | 0.95 | 78.0 | 5.81e-01 | 100.0% | 39.2% |
| 4927950 | 75.1.1.4 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like | 0.93 | 88.0 | 6.31e-01 | 100.0% | 44.4% |
| None | — | 0.65 | 47.0 | 3.92e-01 | 79.6% | 88.0% | |
| 4280256 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.64 | 47.0 | 4.88e-01 | 79.6% | 98.0% |
| 4952531 | 375.1.2.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin › Desulfoferrod_N | 0.64 | 42.0 | 4.71e-01 | 72.2% | 92.5% |
| 4680376 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.63 | 46.0 | 4.67e-01 | 81.5% | 94.5% |
| 4070010 | 375.1.2.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin › Desulfoferrod_N | 0.62 | 43.0 | 4.70e-01 | 75.9% | 97.5% |
| 3989139 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.62 | 45.0 | 4.32e-01 | 79.6% | 83.1% |
| 4627221 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.62 | 44.0 | 4.17e-01 | 75.9% | 76.9% |
| 4516378 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.62 | 45.0 | 4.19e-01 | 79.6% | 72.9% |
| 4665407 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.62 | 44.0 | 4.61e-01 | 77.8% | 98.0% |
| 3941962 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.61 | 44.0 | 3.77e-01 | 77.8% | 65.6% |
| 4952878 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.59 | 43.0 | 4.30e-01 | 77.8% | 89.1% |
| 3604642 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 41.0 | 4.40e-01 | 75.9% | 97.8% |
| 4971396 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 42.0 | 4.19e-01 | 77.8% | 92.7% |
| 5054307 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 42.0 | 4.44e-01 | 75.9% | 100.0% |
| 3184022 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.58 | 45.0 | 3.47e-01 | 88.9% | 94.6% |
| 4129996 | 375.1.1.239 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › UPF0515 | 0.57 | 39.0 | 4.38e-01 | 72.2% | 97.5% |
| 3236126 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.57 | 43.0 | 3.37e-01 | 85.2% | 56.8% |
| 3255732 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 42.0 | 3.55e-01 | 81.5% | 98.9% |
| 3668092 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 40.0 | 3.92e-01 | 75.9% | 96.7% |
| 1683816 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 41.0 | 4.04e-01 | 77.8% | 98.2% |
| 3809044 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 38.0 | 4.03e-01 | 70.4% | 86.7% |
| 3897681 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 40.0 | 3.88e-01 | 77.8% | 90.0% |
| 5034040 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 39.0 | 3.92e-01 | 77.8% | 96.4% |
| 3529581 | 103.1.1.67 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UPF0515 | 0.55 | 37.0 | 3.93e-01 | 70.4% | 84.4% |
| 3244077 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.55 | 39.0 | 3.85e-01 | 77.8% | 90.0% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.53 | 38.0 | 3.69e-01 | 88.9% | 67.7% |
| 4280097 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.53 | 38.0 | 3.75e-01 | 81.5% | 96.7% |
| 4948217 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.52 | 35.0 | 3.87e-01 | 75.9% | 90.0% |
| 4954630 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.51 | 37.0 | 3.91e-01 | 77.8% | 93.3% |
| 4126506 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.51 | 35.0 | 3.63e-01 | 74.1% | 80.0% |
| 3699982 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 39.0 | 3.09e-01 | 87.0% | 69.2% |
| 1806777 | 12.1.1.53 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C_2 | 0.50 | 37.0 | 3.29e-01 | 83.3% | 71.8% |
| 3792503 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 39.0 | 2.72e-01 | 88.9% | 64.0% |
| 3226989 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.50 | 38.0 | 3.83e-01 | 87.0% | 87.3% |