Back to structures

IMGVR_UViG_3300037558_002956-3300037558-Ga0314846_0009094_3203_3358

Arc-Vir

IMGVR_UViG_3300037558_002956-3300037558-Ga0314846_0009094_3203_3358

Quality

92.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-48
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.75 64.0 5.38e-01 97.9% 69.5%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.75 65.0 4.38e-01 100.0% 65.8%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.73 63.0 5.23e-01 97.9% 73.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.71 59.0 4.16e-01 100.0% 31.7%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.71 58.0 4.84e-01 95.7% 52.9%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.70 59.0 4.71e-01 97.9% 66.0%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.69 56.0 5.61e-01 100.0% 92.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.69 56.0 5.14e-01 100.0% 69.7%
1konA02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.68 55.0 4.58e-01 95.7% 50.0%
5zneA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 58.0 5.08e-01 100.0% 100.0%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 59.0 4.96e-01 100.0% 100.0%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 57.0 4.44e-01 100.0% 55.0%
6kryA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 50.0 3.63e-01 87.2% 76.1%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.65 55.0 4.64e-01 100.0% 90.5%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.65 51.0 4.37e-01 100.0% 57.6%
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 4.23e-01 100.0% 47.8%
2h41A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 53.0 4.27e-01 100.0% 47.4%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 51.0 3.82e-01 100.0% 34.1%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.62 50.0 4.23e-01 100.0% 90.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 49.0 4.15e-01 100.0% 58.5%
4clcA00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.61 44.0 3.11e-01 80.9% 24.9%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 3.99e-01 100.0% 43.3%
3v6oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 48.0 4.03e-01 100.0% 49.4%
3kt9A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.60 48.0 3.87e-01 95.7% 99.0%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 3.56e-01 100.0% 33.8%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.59 40.0 2.71e-01 72.3% 21.5%
3fsyA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.59 41.0 4.28e-01 100.0% 90.0%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.66e-01 100.0% 68.2%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.70e-01 100.0% 52.8%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 41.0 2.98e-01 76.6% 72.6%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 46.0 3.90e-01 100.0% 67.4%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.57 45.0 3.26e-01 100.0% 76.6%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.57 39.0 3.20e-01 100.0% 33.6%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 39.0 3.09e-01 83.0% 31.4%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.56 47.0 3.83e-01 100.0% 67.4%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 44.0 3.04e-01 87.2% 97.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 42.0 3.60e-01 100.0% 60.4%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.04e-01 87.2% 42.1%
1rh8A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 42.0 3.16e-01 100.0% 47.2%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 2.77e-01 100.0% 86.5%
3nmeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.48e-01 93.6% 49.5%
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.45e-01 97.9% 79.0%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 38.0 2.89e-01 100.0% 29.0%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.49e-01 100.0% 50.5%
4p6bB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 37.0 2.29e-01 83.0% 85.9%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.81 71.0 6.21e-01 97.9% 100.0%
3404255 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.81 63.0 6.18e-01 100.0% 80.0%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.80 71.0 6.10e-01 100.0% 97.3%
4033642 304.8.1.42 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3388 0.78 66.0 5.34e-01 100.0% 77.9%
4952685 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.76 67.0 5.63e-01 100.0% 95.0%
3510118 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.75 60.0 5.73e-01 100.0% 74.5%
3185862 4007.1.1.1 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.75 61.0 4.51e-01 91.5% 35.8%
4927986 206.1.3.17 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.74 61.0 3.68e-01 97.9% 14.6%
4978332 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.71 60.0 5.13e-01 100.0% 97.5%
1844216 4007.1.1.1 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.71 58.0 5.75e-01 95.7% 88.2%
4038267 4007.1.1.1 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.71 58.0 4.59e-01 93.6% 44.4%
3486002 4007.1.1.0 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins 0.71 59.0 4.73e-01 95.7% 47.4%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.69 56.0 5.59e-01 100.0% 88.0%
4138417 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.69 61.0 5.13e-01 100.0% 88.7%
4033537 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.68 58.0 3.75e-01 100.0% 24.3%
3689284 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.68 59.0 3.79e-01 100.0% 25.8%
4138617 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.68 58.0 3.85e-01 100.0% 27.3%
4100104 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.68 58.0 3.75e-01 100.0% 25.7%
4961379 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.67 57.0 3.75e-01 100.0% 21.8%
4358359 4943.1.1.1 a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL 0.67 59.0 4.60e-01 100.0% 56.0%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.66 52.0 5.13e-01 100.0% 86.0%
4956135 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.66 54.0 5.09e-01 97.9% 100.0%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.66 50.0 5.07e-01 100.0% 95.6%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 56.0 5.56e-01 100.0% 92.0%
4668972 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.66 56.0 3.79e-01 100.0% 30.9%
4976626 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.66 52.0 3.42e-01 93.6% 100.0%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.66 51.0 5.25e-01 100.0% 95.6%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.64 50.0 4.95e-01 100.0% 86.0%
4944477 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 53.0 3.64e-01 100.0% 54.1%
3251827 3570.1.1.0 a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily 0.64 51.0 3.78e-01 100.0% 38.0%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.64 48.0 4.87e-01 100.0% 95.6%
4547274 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.64 52.0 4.18e-01 95.7% 97.0%
5050437 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 49.0 4.62e-01 95.7% 98.5%
4209418 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 3.96e-01 100.0% 44.2%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.63 50.0 5.14e-01 95.7% 95.6%
5076160 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.62 52.0 4.05e-01 100.0% 57.9%
3600440 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 52.0 4.32e-01 100.0% 60.0%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 48.0 4.78e-01 100.0% 98.0%
3499101 3346.1.1.5 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.61 50.0 3.49e-01 100.0% 28.7%
3403046 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 51.0 4.18e-01 100.0% 53.7%
3909457 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 4.04e-01 100.0% 44.8%
3905572 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 52.0 4.13e-01 100.0% 49.0%
4469838 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.60 51.0 3.58e-01 100.0% 64.8%
5003527 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.60 48.0 3.57e-01 100.0% 46.0%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.59 46.0 4.42e-01 95.7% 83.3%
5036139 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.59 46.0 3.79e-01 95.7% 46.7%
3711668 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.58 46.0 3.97e-01 100.0% 81.1%
4565829 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.58 42.0 2.95e-01 83.0% 25.0%
3936739 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 47.0 4.04e-01 100.0% 76.5%
4950851 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 43.0 4.43e-01 87.2% 97.8%
4955152 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.58 40.0 2.85e-01 78.7% 32.8%
4003481 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 48.0 3.84e-01 100.0% 44.8%
4944411 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 41.0 3.12e-01 83.0% 29.6%
3597533 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.57 45.0 3.70e-01 100.0% 79.0%
3666871 10.4.1.26 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › GUB_WAK_bind 0.57 47.0 3.15e-01 100.0% 55.2%
3219557 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 48.0 4.53e-01 100.0% 93.3%
3940821 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 45.0 3.29e-01 100.0% 37.3%
3879988 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.54 45.0 2.95e-01 91.5% 30.2%
4024122 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 42.0 3.63e-01 100.0% 95.3%
3256588 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 2.79e-01 97.9% 27.3%