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IMGVR_UViG_3300037558_003010-3300037558-Ga0314846_0006959_7925_8185
Arc-VirIMGVR_UViG_3300037558_003010-3300037558-Ga0314846_0006959_7925_8185
Identity
- Kingdom:
- archaea
Quality
91.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-84
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vgpA00 | 3.40.50.12610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.83 | 75.0 | 5.50e-01 | 100.0% | 63.8% |
| 6lbsB01 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.66 | 50.0 | 4.72e-01 | 83.1% | 91.1% |
| 3efaA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 58.0 | 4.46e-01 | 100.0% | 92.5% |
| 2ql3A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.65 | 43.0 | 3.82e-01 | 95.4% | 45.5% |
| 2jtvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 47.0 | 4.72e-01 | 80.0% | 76.9% |
| 4xpkA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 56.0 | 4.44e-01 | 100.0% | 70.9% |
| 2jdcA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 56.0 | 4.34e-01 | 100.0% | 94.5% |
| 3fxtA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 54.0 | 4.89e-01 | 96.9% | 95.6% |
| 2oh1C00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 54.0 | 4.02e-01 | 100.0% | 66.3% |
| 1wj5A01 | 1.10.10.980 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain | 0.62 | 46.0 | 4.08e-01 | 81.5% | 88.8% |
| 6g80B01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 55.0 | 3.81e-01 | 100.0% | 40.7% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 44.0 | 4.17e-01 | 81.5% | 90.1% |
| 3frhA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 52.0 | 3.83e-01 | 100.0% | 46.4% |
| 3juwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 50.0 | 3.83e-01 | 98.5% | 68.9% |
| 4e2aA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 51.0 | 3.86e-01 | 100.0% | 95.3% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.58 | 42.0 | 4.02e-01 | 80.0% | 84.0% |
| 3fxqA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 40.0 | 3.52e-01 | 95.4% | 47.1% |
| 6az1a00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 48.0 | 4.71e-01 | 93.8% | 91.7% |
| 1avaA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 42.0 | 4.45e-01 | 95.4% | 89.7% |
| 1jsxA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 49.0 | 3.54e-01 | 100.0% | 56.0% |
| 3gkuA03 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.55 | 41.0 | 4.08e-01 | 84.6% | 83.1% |
| 1jo0A00 | 3.30.110.60 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like | 0.55 | 43.0 | 3.86e-01 | 89.2% | 67.0% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.55 | 43.0 | 3.39e-01 | 95.4% | 41.2% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.54 | 42.0 | 3.30e-01 | 95.4% | 40.4% |
| 3thxB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.52 | 39.0 | 3.14e-01 | 90.8% | 41.4% |
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 43.0 | 3.25e-01 | 100.0% | 78.8% |
| 1y10B02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 42.0 | 3.21e-01 | 100.0% | 69.9% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4963051 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.91 | 86.0 | 6.40e-01 | 100.0% | 44.8% |
| 4996369 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.91 | 85.0 | 6.65e-01 | 100.0% | 56.8% |
| 4985081 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.91 | 84.0 | 6.56e-01 | 98.5% | 52.0% |
| 4938874 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.90 | 83.0 | 6.18e-01 | 100.0% | 46.7% |
| 4996459 | 3110.1.1.20 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › DUF6798 | 0.89 | 82.0 | 6.40e-01 | 100.0% | 54.6% |
| 5007794 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.89 | 80.0 | 6.20e-01 | 98.5% | 48.9% |
| 4949651 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.87 | 77.0 | 6.17e-01 | 100.0% | 51.2% |
| 4984164 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.87 | 79.0 | 6.07e-01 | 100.0% | 61.4% |
| 4946951 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.86 | 80.0 | 5.42e-01 | 100.0% | 72.9% |
| 5028146 | 3110.1.1.3 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › AglB_core-like | 0.86 | 79.0 | 5.95e-01 | 100.0% | 67.6% |
| 4952119 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.86 | 78.0 | 6.00e-01 | 100.0% | 47.4% |
| 4996464 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.85 | 79.0 | 5.98e-01 | 100.0% | 67.1% |
| 4940154 | 3352.1.1.1 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 | 0.85 | 78.0 | 4.51e-01 | 100.0% | 17.2% |
| 4959982 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.84 | 77.0 | 5.29e-01 | 100.0% | 44.9% |
| 4995588 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.83 | 75.0 | 5.75e-01 | 100.0% | 53.8% |
| 5067582 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.80 | 74.0 | 5.96e-01 | 100.0% | 55.9% |
| 4959896 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.78 | 70.0 | 5.60e-01 | 100.0% | 60.0% |
| 3391678 | 3110.1.1.4 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › Dpy19 | 0.77 | 67.0 | 5.17e-01 | 100.0% | 61.3% |
| 4958207 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.76 | 69.0 | 5.58e-01 | 100.0% | 63.3% |
| 5023726 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.73 | 64.0 | 5.30e-01 | 100.0% | 60.0% |
| 4400337 | 3110.1.1.16 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › PF27383 | 0.69 | 60.0 | 4.99e-01 | 100.0% | 59.7% |
| 5071960 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.68 | 60.0 | 4.45e-01 | 100.0% | 66.7% |
| 4976146 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.67 | 58.0 | 4.43e-01 | 100.0% | 69.4% |
| 5034671 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.67 | 58.0 | 4.40e-01 | 100.0% | 70.0% |
| 3339531 | 101.1.2.572 ↗ | alpha arrays › HTH › HTH › winged helix domain › wH_RNase_II | 0.66 | 49.0 | 4.68e-01 | 83.1% | 83.7% |
| 5029311 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.65 | 58.0 | 4.51e-01 | 100.0% | 57.9% |
| 5003921 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.63 | 55.0 | 4.51e-01 | 100.0% | 80.8% |
| 3264346 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.62 | 54.0 | 3.81e-01 | 100.0% | 69.5% |
| 3989654 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.61 | 52.0 | 4.10e-01 | 100.0% | 95.3% |
| 4968658 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.61 | 46.0 | 4.44e-01 | 83.1% | 77.3% |
| 3220991 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 50.0 | 4.03e-01 | 96.9% | 66.7% |
| 4976619 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.58 | 46.0 | 4.43e-01 | 86.2% | 76.0% |
| 5001624 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.58 | 44.0 | 4.23e-01 | 83.1% | 80.0% |
| 4182527 | 2003.1.5.68 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS_N | 0.58 | 50.0 | 3.86e-01 | 100.0% | 52.3% |
| 5055166 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.58 | 45.0 | 4.48e-01 | 86.2% | 81.4% |
| 1844427 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.58 | 49.0 | 3.88e-01 | 100.0% | 92.5% |
| 5027723 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.57 | 45.0 | 4.41e-01 | 86.2% | 78.6% |
| 3851347 | 101.1.2.235 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nlrc4-like_WHD | 0.57 | 41.0 | 4.09e-01 | 80.0% | 75.7% |
| 4930880 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.57 | 44.0 | 4.40e-01 | 89.2% | 90.0% |
| 5010461 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.56 | 44.0 | 4.25e-01 | 86.2% | 77.3% |
| 5057825 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.56 | 43.0 | 4.17e-01 | 86.2% | 73.3% |
| 5010300 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.56 | 44.0 | 4.22e-01 | 87.7% | 81.3% |
| 3758608 | 320.4.1.7 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PF26117 | 0.55 | 44.0 | 3.63e-01 | 87.7% | 55.0% |
| 4936788 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.55 | 43.0 | 4.13e-01 | 87.7% | 84.0% |
| 3948498 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.55 | 46.0 | 3.51e-01 | 100.0% | 46.3% |
| 3421421 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.55 | 44.0 | 2.80e-01 | 95.4% | 56.7% |
| 4520130 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.54 | 38.0 | 2.41e-01 | 90.8% | 15.0% |
| 4979496 | 328.9.1.0 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain | 0.54 | 43.0 | 4.30e-01 | 93.8% | 96.9% |
| 3539709 | 101.1.2.838 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26117 | 0.53 | 39.0 | 3.77e-01 | 78.5% | 84.0% |
| 4403052 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.52 | 44.0 | 3.51e-01 | 98.5% | 57.9% |
| 3966435 | 7581.1.1.3 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C | 0.52 | 41.0 | 2.47e-01 | 95.4% | 83.2% |
| 3472168 | 101.1.2.147 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC4_C | 0.52 | 34.0 | 2.87e-01 | 70.8% | 74.8% |
| 3705782 | 4357.1.1.8 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › XPB_C | 0.51 | 35.0 | 3.03e-01 | 87.7% | 44.8% |
| 5070657 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.51 | 37.0 | 3.58e-01 | 93.8% | 68.0% |
| 5056573 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.50 | 41.0 | 2.92e-01 | 95.4% | 68.0% |
| 3781780 | 304.159.1.0 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB | 0.50 | 35.0 | 3.08e-01 | 75.4% | 82.9% |