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IMGVR_UViG_3300037579_000125-3300037579-Ga0411629_00328_1_129
Arc-VirIMGVR_UViG_3300037579_000125-3300037579-Ga0411629_00328_1_129
Identity
- Kingdom:
- archaea
Quality
80.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-39
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00208.28 best | ELFV_dehydrog | 24.4 | 3.00e-05 | 100.0% | 14.9% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 49.0 | 3.53e-01 | 76.9% | 29.9% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.69 | 58.0 | 4.83e-01 | 97.4% | 67.1% |
| 3ce2A01 | 1.20.140.70 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain | 0.67 | 48.0 | 3.21e-01 | 76.9% | 24.0% |
| 3lkdB01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.67 | 54.0 | 3.53e-01 | 97.4% | 20.0% |
| 1qh5A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.64 | 53.0 | 3.24e-01 | 97.4% | 15.4% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.64 | 47.0 | 3.33e-01 | 79.5% | 28.9% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 50.0 | 3.90e-01 | 100.0% | 62.2% |
| 2qvwB05 | 1.10.1740.150 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.59 | 49.0 | 3.99e-01 | 100.0% | 48.7% |
| 1vz8A02 | 3.10.20.340 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain | 0.59 | 43.0 | 3.16e-01 | 79.5% | 35.7% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.59 | 48.0 | 3.22e-01 | 100.0% | 52.0% |
| 2g5dA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.56 | 43.0 | 2.90e-01 | 100.0% | 83.1% |
| 1bi0A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.56 | 42.0 | 3.66e-01 | 87.2% | 83.3% |
| 2kvdA02 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.51 | 38.0 | 3.59e-01 | 97.4% | 89.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945868 | 2003.1.1.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ELFV_dehydrog | 0.92 | 83.0 | 4.92e-01 | 100.0% | 15.6% |
| 3980738 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.81 | 57.0 | 3.36e-01 | 74.4% | 23.5% |
| 3602245 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.80 | 60.0 | 5.05e-01 | 82.1% | 49.2% |
| 3306976 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.79 | 57.0 | 3.89e-01 | 76.9% | 23.8% |
| 4951392 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 57.0 | 3.80e-01 | 84.6% | 22.0% |
| 1681684 | 244.1.1.9 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C | 0.66 | 54.0 | 3.44e-01 | 92.3% | 75.3% |
| 4989310 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.66 | 50.0 | 3.31e-01 | 89.7% | 19.6% |
| 3724838 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.64 | 53.0 | 4.41e-01 | 94.9% | 100.0% |
| 4033780 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.60 | 45.0 | 3.19e-01 | 84.6% | 28.5% |
| 3473911 | 2004.1.1.698 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, ResIII, HDA2-3 | 0.60 | 53.0 | 2.90e-01 | 100.0% | 41.2% |