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IMGVR_UViG_3300037670_000026-3300037670-Ga0310931_002637_45_533
Arc-VirIMGVR_UViG_3300037670_000026-3300037670-Ga0310931_002637_45_533
Identity
- Kingdom:
- archaea
Quality
66.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-56
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.84 | 58.0 | 5.94e-01 | 72.9% | 78.7% |
| 2ayjA00 | 4.10.1060.50 | Few Secondary Structures › Irregular › ZNF265 like › | 0.79 | 51.0 | 4.87e-01 | 70.8% | 57.1% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.77 | 52.0 | 5.31e-01 | 70.8% | 95.7% |
| 1twfL00 | 2.20.28.30 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L | 0.76 | 53.0 | 5.40e-01 | 72.9% | 78.3% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.75 | 52.0 | 5.14e-01 | 72.9% | 86.0% |
| 3a43B02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.73 | 49.0 | 5.49e-01 | 70.8% | 100.0% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.70 | 50.0 | 5.43e-01 | 75.0% | 97.3% |
| 4aybP00 | 2.20.28.30 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L | 0.69 | 48.0 | 5.01e-01 | 72.9% | 81.8% |
| 2lcqA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.68 | 47.0 | 5.00e-01 | 75.0% | 92.1% |
| 2cklB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.66 | 49.0 | 4.30e-01 | 79.2% | 71.8% |
| 1l1lA03 | 3.90.1390.10 | Alpha Beta › Alpha-Beta Complex › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 | 0.63 | 57.0 | 4.51e-01 | 100.0% | 78.7% |
| 3lgdA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 45.0 | 2.64e-01 | 93.8% | 82.0% |
| 4izzB03 | 1.10.10.1670 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain | 0.56 | 48.0 | 3.56e-01 | 93.8% | 49.6% |
| 4p5aC00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.52 | 46.0 | 2.98e-01 | 100.0% | 43.5% |
| 3tqtA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.51 | 39.0 | 3.46e-01 | 100.0% | 57.4% |
| 6lnhB01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.51 | 43.0 | 2.76e-01 | 91.7% | 25.8% |
| 2anvA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 45.0 | 3.23e-01 | 100.0% | 33.6% |
| 8e83B01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 41.0 | 2.46e-01 | 93.8% | 39.2% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013997 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.90 | 65.0 | 6.73e-01 | 75.0% | 80.0% |
| 4183914 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.87 | 59.0 | 4.32e-01 | 70.8% | 29.6% |
| 4593851 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.86 | 58.0 | 4.34e-01 | 70.8% | 30.9% |
| 4579287 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.85 | 60.0 | 3.49e-01 | 72.9% | 11.3% |
| 3480424 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.84 | 58.0 | 6.31e-01 | 72.9% | 92.5% |
| 2543587 | 375.1.1.48 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N | 0.84 | 54.0 | 6.26e-01 | 70.8% | 94.1% |
| 4607892 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.84 | 57.0 | 6.20e-01 | 70.8% | 85.0% |
| 3489248 | 375.1.1.45 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10 | 0.84 | 60.0 | 6.44e-01 | 75.0% | 95.0% |
| 4325327 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.83 | 56.0 | 6.35e-01 | 70.8% | 97.1% |
| 4262527 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.82 | 55.0 | 6.23e-01 | 70.8% | 97.1% |
| 2507149 | 375.1.1.48 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N | 0.80 | 51.0 | 5.82e-01 | 70.8% | 94.1% |
| 5023733 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.79 | 55.0 | 3.37e-01 | 72.9% | 14.3% |
| 4008953 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 54.0 | 6.03e-01 | 75.0% | 100.0% |
| 4121492 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.79 | 53.0 | 3.16e-01 | 70.8% | 10.6% |
| 3040112 | 375.1.1.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD | 0.78 | 54.0 | 5.38e-01 | 72.9% | 72.0% |
| 4933180 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 51.0 | 5.86e-01 | 70.8% | 94.3% |
| 3933289 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 58.0 | 6.01e-01 | 81.2% | 88.9% |
| 5027281 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 54.0 | 5.03e-01 | 72.9% | 62.1% |
| 3596753 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 52.0 | 5.22e-01 | 72.9% | 98.0% |
| 5056653 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.76 | 60.0 | 6.23e-01 | 87.5% | 100.0% |
| 4666101 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 51.0 | 5.22e-01 | 70.8% | 77.8% |
| 5057901 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.74 | 50.0 | 4.96e-01 | 70.8% | 68.0% |
| 5072403 | 375.5.1.0 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like | 0.73 | 52.0 | 5.40e-01 | 79.2% | 82.2% |
| 4194349 | 375.1.1.8 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HypA | 0.73 | 49.0 | 5.30e-01 | 70.8% | 85.0% |
| 4931152 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 48.0 | 5.37e-01 | 75.0% | 97.1% |
| 4144580 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.72 | 48.0 | 3.70e-01 | 70.8% | 29.8% |
| 3341146 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.72 | 50.0 | 4.31e-01 | 75.0% | 48.8% |
| 4967717 | 375.1.1.181 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PALP | 0.71 | 47.0 | 5.19e-01 | 72.9% | 94.3% |
| 5024279 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 52.0 | 5.34e-01 | 81.2% | 88.9% |
| 5040678 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 45.0 | 4.69e-01 | 70.8% | 75.6% |
| 4241211 | 375.1.1.204 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central | 0.66 | 49.0 | 3.76e-01 | 79.2% | 52.4% |
| 4983060 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.65 | 53.0 | 4.44e-01 | 89.6% | 70.0% |
| 3609555 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 49.0 | 4.90e-01 | 89.6% | 100.0% |
| 3415761 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.63 | 45.0 | 4.49e-01 | 77.1% | 96.0% |
| 3445198 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 50.0 | 3.51e-01 | 95.8% | 61.8% |
| 3442989 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.60 | 52.0 | 3.60e-01 | 100.0% | 62.9% |
| 4954096 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.60 | 50.0 | 3.58e-01 | 95.8% | 69.6% |
| 4655608 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 44.0 | 3.12e-01 | 89.6% | 79.4% |
| 5011380 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.56 | 45.0 | 2.91e-01 | 100.0% | 17.9% |
| 3995853 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 39.0 | 2.41e-01 | 77.1% | 52.7% |
| 4461109 | 11.1.1.48 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N | 0.53 | 37.0 | 3.10e-01 | 72.9% | 55.6% |