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IMGVR_UViG_3300037673_000034-3300037673-Ga0314854_000381_28313_28939

Arc-Vir

IMGVR_UViG_3300037673_000034-3300037673-Ga0314854_000381_28313_28939

Identity

Kingdom:
archaea

Quality

63.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 84-179
PDB
Domain cluster: rep: IMGVR_UViG_2634166507_000001-2634166507-2635972848__D91-182
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 5.40e-01 89.6% 85.4%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 5.49e-01 83.3% 92.0%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 5.13e-01 88.5% 82.4%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 5.07e-01 88.5% 82.1%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 5.38e-01 88.5% 88.2%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.82e-01 81.2% 75.0%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.88e-01 87.5% 73.8%
1zelA01 3.90.56.20 Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › replication protein C, winged helix domain 0.65 46.0 4.59e-01 96.9% 71.4%
2ly1A03 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.65 44.0 4.79e-01 86.5% 84.0%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 5.37e-01 88.5% 97.5%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.96e-01 88.5% 84.6%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.61 48.0 3.85e-01 85.4% 71.4%
3e3rB01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 44.0 4.68e-01 82.3% 87.1%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.59 42.0 3.53e-01 85.4% 43.8%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.65e-01 100.0% 82.5%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 30.0 3.65e-01 96.9% 87.7%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.54 49.0 3.98e-01 100.0% 73.1%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 37.0 2.61e-01 100.0% 23.1%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.54 28.0 3.59e-01 88.5% 90.7%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 33.0 3.88e-01 81.2% 92.2%
5jolA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 36.0 3.89e-01 89.6% 84.1%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 32.0 3.74e-01 81.2% 92.2%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 31.0 3.67e-01 81.2% 92.1%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.51 24.0 3.26e-01 75.0% 91.3%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 29.0 3.43e-01 75.0% 86.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 28.0 3.04e-01 75.0% 63.3%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 4.00e-01 85.4% 90.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 28.0 3.12e-01 93.8% 69.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5024565 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.78 54.0 4.81e-01 89.6% 51.1%
4997662 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 54.0 5.13e-01 83.3% 61.8%
3165321 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.76 56.0 5.83e-01 84.4% 82.2%
4932158 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.76 52.0 5.55e-01 84.4% 80.0%
4985370 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 53.0 5.45e-01 84.4% 76.7%
5078617 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 53.0 5.38e-01 83.3% 73.7%
5035624 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.75 55.0 5.81e-01 82.3% 85.9%
4972865 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.75 54.0 5.09e-01 87.5% 63.7%
4600617 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.74 52.0 4.51e-01 89.6% 47.3%
5030252 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 52.0 5.20e-01 87.5% 71.0%
4941699 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 53.0 5.84e-01 90.6% 96.0%
5036590 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 50.0 4.74e-01 87.5% 59.1%
4941351 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 49.0 5.15e-01 83.3% 78.8%
4135088 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.71 50.0 4.35e-01 89.6% 47.3%
5021360 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.71 52.0 5.42e-01 88.5% 83.1%
3279756 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.71 50.0 4.39e-01 84.4% 50.0%
5003985 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.70 49.0 4.41e-01 89.6% 51.9%
5046227 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 50.0 5.27e-01 84.4% 83.5%
3737539 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.70 53.0 5.73e-01 84.4% 95.0%
None — 0.70 49.0 4.46e-01 81.2% 54.3%
4958040 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.70 53.0 5.39e-01 89.6% 81.1%
4955128 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 47.0 4.13e-01 84.4% 46.5%
5028427 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 48.0 4.72e-01 82.3% 65.7%
2137469 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.69 49.0 4.24e-01 89.6% 48.3%
4976723 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 47.0 5.31e-01 86.5% 95.7%
4939871 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.69 51.0 4.97e-01 88.5% 71.4%
5064203 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 49.0 5.08e-01 84.4% 80.0%
4625029 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.68 51.0 5.01e-01 89.6% 73.3%
2685 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 4.88e-01 81.2% 77.5%
3264668 101.1.2.304 ↗ alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.67 47.0 5.17e-01 82.3% 93.3%
5042212 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 43.0 3.83e-01 83.3% 45.0%
5038626 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.66 49.0 4.26e-01 88.5% 51.7%
3997898 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.66 49.0 4.64e-01 88.5% 66.1%
5080548 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 49.0 5.43e-01 85.4% 100.0%
3602673 2004.1.1.1085 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30184 0.65 54.0 5.14e-01 88.5% 78.2%
4938040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 3.99e-01 85.4% 47.3%
5063930 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 45.0 4.61e-01 83.3% 77.8%
5075009 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 4.55e-01 83.3% 74.7%
3630104 192.24.1.6 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.62 50.0 3.36e-01 87.5% 22.1%
4936864 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 4.41e-01 82.3% 73.7%
5079431 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.44e-01 85.4% 86.9%
3717104 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.77e-01 88.5% 47.4%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 30.0 3.78e-01 88.5% 87.3%
3729161 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.57 35.0 3.63e-01 70.8% 66.7%
3596201 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 47.0 4.56e-01 94.8% 94.3%
3719856 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 46.0 3.93e-01 94.8% 58.1%
4043601 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.53 33.0 3.86e-01 83.3% 90.8%
5025933 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 4.07e-01 87.5% 81.1%
4582456 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.52 33.0 3.78e-01 91.7% 87.1%
3348336 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.52 43.0 3.06e-01 88.5% 49.8%
4252940 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.52 32.0 3.81e-01 82.3% 92.3%
3383283 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 32.0 3.76e-01 81.2% 92.3%
4425795 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 32.0 3.76e-01 91.7% 93.8%
4433263 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 32.0 3.73e-01 91.7% 92.3%
5032233 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 4.00e-01 91.7% 92.2%
4050524 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 31.0 3.66e-01 82.3% 92.3%
3385781 2003.1.15.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain 0.51 42.0 3.44e-01 92.7% 60.0%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.50 28.0 3.32e-01 90.6% 85.0%