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IMGVR_UViG_3300037807_000767-3300037807-Ga0427881_005958_3409_3870

Arc-Vir

IMGVR_UViG_3300037807_000767-3300037807-Ga0427881_005958_3409_3870

Quality

79.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-70
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.78 68.0 5.72e-01 100.0% 73.7%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 52.0 3.90e-01 100.0% 29.8%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.73 62.0 6.07e-01 97.8% 92.0%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 48.0 3.99e-01 100.0% 92.7%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.59 46.0 4.03e-01 100.0% 67.1%
4qnnA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 48.0 2.94e-01 100.0% 23.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 43.0 3.64e-01 100.0% 53.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 41.0 3.02e-01 100.0% 29.3%
2hpuA02 3.30.70.2050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.67e-01 97.8% 61.9%
5noiA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.41e-01 100.0% 50.0%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 44.0 3.05e-01 100.0% 38.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.84 76.0 7.38e-01 100.0% 92.0%
5018703 815.1.1.0 a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.77 70.0 5.47e-01 100.0% 56.7%
5045852 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.69 56.0 4.39e-01 100.0% 50.0%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.67 57.0 5.01e-01 100.0% 94.3%
3941732 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.67 58.0 5.67e-01 100.0% 90.0%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.67 57.0 5.00e-01 100.0% 95.7%
3955667 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.66 54.0 4.28e-01 100.0% 46.7%
3282305 4187.1.1.0 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like 0.66 51.0 4.54e-01 100.0% 58.6%
4968352 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.65 52.0 4.45e-01 100.0% 58.8%
3945615 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.64 54.0 3.85e-01 97.8% 46.7%
3959440 4.1.1.180 beta barrels › SH3 › SH3 › SH3 › DUF3107 0.64 53.0 4.83e-01 100.0% 95.4%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 50.0 4.92e-01 100.0% 96.0%
3603250 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 42.0 3.19e-01 75.6% 27.5%
5027350 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 50.0 3.64e-01 100.0% 32.6%
3299572 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 45.0 3.58e-01 88.9% 70.5%
2579422 4326.1.1.1 a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.58 46.0 3.87e-01 100.0% 58.5%
3929133 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.74e-01 100.0% 64.2%
4024040 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.55 43.0 4.00e-01 100.0% 66.2%
3672250 207.1.1.116 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.55 44.0 3.03e-01 100.0% 23.7%
3926176 4357.1.1.3 beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 0.52 41.0 3.40e-01 100.0% 86.0%
5022263 322.1.1.2 a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.52 41.0 3.30e-01 100.0% 47.3%
3701633 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 42.0 3.50e-01 97.8% 76.5%
D2 high residues 74-152
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 49.0 4.31e-01 87.3% 91.1%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.61 42.0 3.60e-01 75.9% 44.8%
2hqsA01 3.40.50.10070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain 0.60 44.0 3.71e-01 82.3% 44.4%
6p0cA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 3.80e-01 83.5% 95.2%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 50.0 4.33e-01 100.0% 90.7%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.56 41.0 3.37e-01 78.5% 76.8%
1cwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.94e-01 78.5% 88.2%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.56 41.0 3.45e-01 78.5% 58.1%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 48.0 4.30e-01 98.7% 77.4%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.88e-01 82.3% 84.8%
1s3iA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.55 42.0 3.17e-01 83.5% 44.4%
1h4iA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.55 47.0 2.83e-01 96.2% 20.0%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.33e-01 87.3% 44.2%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.55 33.0 3.32e-01 82.3% 57.1%
3louA02 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.53 40.0 3.05e-01 82.3% 40.1%
3p9xA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.53 39.0 3.01e-01 81.0% 41.0%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 45.0 3.52e-01 100.0% 84.6%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.53 43.0 4.09e-01 92.4% 99.0%
1w18A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 2.78e-01 98.7% 30.7%
4ioyX01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.52 37.0 3.20e-01 75.9% 58.6%
1kcvL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.56e-01 79.7% 84.5%
2cg8C01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.51 39.0 3.46e-01 83.5% 98.3%
5uaiA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.51 38.0 2.88e-01 81.0% 38.3%
2blnA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.51 38.0 2.99e-01 84.8% 46.4%
2lruA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 35.0 3.31e-01 72.2% 68.4%
1zghA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.50 37.0 3.02e-01 81.0% 60.6%
1nbuA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.50 37.0 3.38e-01 83.5% 99.2%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3277940 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.77 49.0 3.42e-01 74.7% 21.3%
4018014 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.64 49.0 3.93e-01 96.2% 42.7%
4025315 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.64 50.0 4.45e-01 84.8% 60.0%
4586503 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 49.0 4.15e-01 87.3% 94.1%
3990413 2.1.1.141 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.62 47.0 5.00e-01 86.1% 92.9%
3813787 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 44.0 3.94e-01 75.9% 65.8%
3577548 331.12.1.0 a+b two layers › TBP-like › YugN-like › YugN-like 0.60 37.0 3.33e-01 93.7% 43.4%
3457141 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 47.0 3.13e-01 86.1% 25.3%
3643907 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 52.0 4.20e-01 100.0% 76.9%
3617201 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.59 41.0 3.54e-01 87.3% 45.6%
3357183 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 48.0 3.84e-01 91.1% 80.0%
5046724 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.58 43.0 3.78e-01 78.5% 53.9%
3251426 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.56 39.0 4.05e-01 73.4% 92.0%
3782874 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 47.0 3.73e-01 100.0% 67.6%
3170704 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.84e-01 88.6% 21.2%
5011661 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.55 45.0 3.51e-01 93.7% 95.3%
161402 5.1.5.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ,PQQ_2 0.55 47.0 2.83e-01 96.2% 19.9%
4981234 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 38.0 4.07e-01 73.4% 86.2%
3910381 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.67e-01 89.9% 29.2%
3888095 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.54 40.0 3.33e-01 78.5% 47.9%
3353945 1.1.7.101 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ubiquitin_UBP8 0.54 43.0 3.36e-01 88.6% 83.9%
3808110 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.54 47.0 3.87e-01 100.0% 58.7%
4255284 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.54 37.0 2.77e-01 73.4% 41.8%
3361070 2003.1.2.102 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.54 45.0 2.91e-01 97.5% 51.7%
3488069 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.73e-01 87.3% 19.5%
3518432 220.1.1.79 beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.53 41.0 3.64e-01 100.0% 57.4%
223631 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.53 45.0 3.41e-01 100.0% 75.4%
4494466 2484.1.1.231 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C 0.53 46.0 3.31e-01 100.0% 55.9%
4259228 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 43.0 3.90e-01 92.4% 100.0%
3485600 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 41.0 2.92e-01 84.8% 53.2%
4583731 2484.1.1.231 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C 0.52 45.0 3.21e-01 100.0% 56.2%
3544935 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.52 37.0 3.36e-01 75.9% 61.8%
3654131 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.52 39.0 3.20e-01 82.3% 75.6%
3588318 7571.1.1.1 a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.52 38.0 2.97e-01 81.0% 42.1%
3586322 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.52 35.0 3.31e-01 72.2% 61.2%
4012773 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 37.0 2.96e-01 75.9% 57.5%
3986558 2484.1.1.231 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C 0.51 44.0 3.49e-01 100.0% 72.8%
3561019 2484.5.1.3 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.51 38.0 3.33e-01 82.3% 50.0%
4026311 7571.1.1.1 a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.51 37.0 2.70e-01 81.0% 37.3%
3498991 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 2.86e-01 91.1% 96.8%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 34.0 2.33e-01 73.4% 17.2%
3173222 4075.1.1.0 a+b complex topology › RGC domain › RGC domain › RGC domain 0.50 35.0 3.15e-01 73.4% 70.4%