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IMGVR_UViG_3300037842_001521-3300037842-Ga0427874_006605_2354_2788
Arc-VirIMGVR_UViG_3300037842_001521-3300037842-Ga0427874_006605_2354_2788
Identity
- Kingdom:
- archaea
Quality
82.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-143
Domain cluster:
rep: js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00222__D3-117
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01624.26 best | MutS_I | 21.4 | 3.40e-04 | 92.3% | 65.5% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o8bB01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.84 | 75.0 | 6.22e-01 | 94.2% | 67.1% |
| 1e3mA01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.84 | 75.0 | 7.03e-01 | 94.2% | 86.2% |
| 1ewqB01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.83 | 74.0 | 7.09e-01 | 94.2% | 83.9% |
| 3thxB01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.82 | 73.0 | 6.71e-01 | 94.2% | 82.4% |
| 2o8eA01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.74 | 64.0 | 6.09e-01 | 93.3% | 86.0% |
| 1a79A02 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.73 | 44.0 | 5.18e-01 | 76.9% | 88.7% |
| 1k7jA00 | 3.90.870.10 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase | 0.61 | 44.0 | 3.59e-01 | 76.0% | 77.6% |
| 3e54A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 42.0 | 3.73e-01 | 76.0% | 80.5% |
| 1kafA00 | 3.90.1150.20 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain | 0.57 | 39.0 | 3.90e-01 | 70.2% | 72.2% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 41.0 | 4.35e-01 | 92.3% | 85.7% |
| 3mfiA02 | 3.40.1170.60 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › | 0.56 | 43.0 | 4.44e-01 | 98.1% | 87.6% |
| 3p3vA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.56 | 46.0 | 4.00e-01 | 100.0% | 57.1% |
| 3ajvA01 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.56 | 38.0 | 4.20e-01 | 95.2% | 92.3% |
| 3menB00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.54 | 47.0 | 3.35e-01 | 100.0% | 47.4% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 38.0 | 3.96e-01 | 91.3% | 80.2% |
| 2kloA00 | 1.10.10.1420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain | 0.53 | 34.0 | 3.19e-01 | 73.1% | 49.3% |
| 1fs0G01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.53 | 45.0 | 4.22e-01 | 95.2% | 76.9% |
| 4z1xA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 42.0 | 3.85e-01 | 87.5% | 88.1% |
| 3qdkA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 45.0 | 3.37e-01 | 96.2% | 87.1% |
| 2gzaB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 3.55e-01 | 96.2% | 83.6% |
| 3mahA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 33.0 | 3.84e-01 | 71.2% | 100.0% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.50 | 38.0 | 3.35e-01 | 92.3% | 54.6% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943694 | 242.3.1.3 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_II | 0.86 | 75.0 | 7.41e-01 | 92.3% | 92.7% |
| 4026490 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.86 | 75.0 | 6.74e-01 | 93.3% | 70.4% |
| 4643759 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.86 | 76.0 | 6.76e-01 | 93.3% | 77.1% |
| 3631275 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.85 | 75.0 | 6.32e-01 | 93.3% | 69.7% |
| 4013603 | 242.3.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I | 0.84 | 75.0 | 6.48e-01 | 93.3% | 74.0% |
| 4179408 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.84 | 74.0 | 6.64e-01 | 93.3% | 95.0% |
| 3789677 | 242.3.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I | 0.84 | 74.0 | 6.37e-01 | 93.3% | 69.7% |
| 3311675 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.84 | 63.0 | 6.24e-01 | 87.5% | 73.6% |
| 4165863 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.84 | 74.0 | 6.70e-01 | 93.3% | 78.5% |
| 4018379 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.84 | 74.0 | 6.88e-01 | 93.3% | 87.2% |
| 2980705 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.84 | 75.0 | 6.18e-01 | 94.2% | 66.7% |
| 3744177 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.84 | 74.0 | 6.42e-01 | 93.3% | 70.0% |
| 3443621 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.83 | 74.0 | 6.25e-01 | 93.3% | 66.9% |
| 3355928 | 242.3.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I | 0.83 | 64.0 | 6.45e-01 | 90.4% | 79.0% |
| 4969652 | 242.3.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I | 0.83 | 74.0 | 7.40e-01 | 93.3% | 97.1% |
| 4142314 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.83 | 73.0 | 6.72e-01 | 93.3% | 94.6% |
| 4419828 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.83 | 73.0 | 7.03e-01 | 93.3% | 89.6% |
| 4863769 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.83 | 74.0 | 6.66e-01 | 94.2% | 80.0% |
| 4027737 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.83 | 73.0 | 6.11e-01 | 94.2% | 66.5% |
| 3781824 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.82 | 74.0 | 6.75e-01 | 94.2% | 86.2% |
| 4426062 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.82 | 72.0 | 6.23e-01 | 93.3% | 76.8% |
| 3830319 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.82 | 72.0 | 6.09e-01 | 94.2% | 63.6% |
| 3705111 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.81 | 72.0 | 6.30e-01 | 94.2% | 72.0% |
| 4404464 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.80 | 70.0 | 6.93e-01 | 93.3% | 91.8% |
| 4982176 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.76 | 45.0 | 5.11e-01 | 77.9% | 77.5% |
| 3927361 | 242.3.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I | 0.76 | 69.0 | 6.42e-01 | 97.1% | 85.6% |
| 3264631 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.75 | 68.0 | 6.45e-01 | 97.1% | 94.2% |
| 3470570 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.74 | 67.0 | 6.47e-01 | 97.1% | 94.8% |
| 3222945 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.74 | 66.0 | 6.26e-01 | 97.1% | 88.3% |
| 4000154 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.73 | 65.0 | 6.19e-01 | 97.1% | 94.2% |
| 3737487 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.73 | 65.0 | 6.07e-01 | 97.1% | 83.2% |
| 4979519 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.72 | 46.0 | 5.14e-01 | 78.8% | 82.5% |
| 956550 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.71 | 57.0 | 5.84e-01 | 84.6% | 91.9% |
| 5058295 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.71 | 45.0 | 4.99e-01 | 76.9% | 82.5% |
| 3645272 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.70 | 62.0 | 5.87e-01 | 97.1% | 84.0% |
| 5052581 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.69 | 46.0 | 5.06e-01 | 77.9% | 84.7% |
| 3172493 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.68 | 61.0 | 5.79e-01 | 97.1% | 90.0% |
| 4344485 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.67 | 41.0 | 4.49e-01 | 76.9% | 75.3% |
| 3813612 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.65 | 45.0 | 4.42e-01 | 79.8% | 66.4% |
| 4216240 | 3696.1.1.5 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › Helicase_C_3 | 0.65 | 42.0 | 5.00e-01 | 74.0% | 97.1% |
| 3443416 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.64 | 45.0 | 4.53e-01 | 78.8% | 72.1% |
| 3671698 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.64 | 45.0 | 4.63e-01 | 79.8% | 76.0% |
| 3244573 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.61 | 45.0 | 4.73e-01 | 76.9% | 92.2% |
| 3641694 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.60 | 41.0 | 4.09e-01 | 70.2% | 86.7% |
| 4395233 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.54 | 42.0 | 3.78e-01 | 82.7% | 90.3% |
| 5008041 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 40.0 | 3.70e-01 | 77.9% | 80.0% |
| 4536899 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.53 | 42.0 | 3.83e-01 | 87.5% | 93.8% |
| 4932500 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.52 | 44.0 | 4.44e-01 | 92.3% | 92.4% |
| 3849895 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.51 | 42.0 | 3.17e-01 | 91.3% | 77.8% |
| 4139805 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 35.0 | 3.96e-01 | 92.3% | 100.0% |
| 1392754 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.50 | 38.0 | 3.92e-01 | 92.3% | 87.4% |